MmuINT0063427 @ mm9
Intron Retention
Gene
ENSMUSG00000090173 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr11:62666457-62666894:+
Coord C1 exon
chr11:62666457-62666657
Coord A exon
chr11:62666658-62666766
Coord C2 exon
chr11:62666767-62666894
Length
109 bp
Sequences
Splice sites
5' ss Seq
TAAGTATGC
5' ss Score
2.72
3' ss Seq
CTTCTTTCTTTTTCTCCCAGGAA
3' ss Score
10.82
Exon sequences
Seq C1 exon
AGGGAAAAGGGGAGAGTTCGCTCCAGTGTATCCATGAAATGAATAGACAGATTTTTGGAAAAGGGGGCATGTCCAGGCTGGGAGATGATCCGTGCAACCTGCTGCTGAGCCTGGATCATGTCCAACTCCTGTCTTCTGGGTACAGCAAATATCGGGACTTTATACGCGACCTGCCTCTCCACCTCTCCAAGTACATTCTAA
Seq A exon
GTATGCTGGGTAGATGAGGGCAATTCTCAGAGACTTCCCACCTGGGCCTAGCTGGGGGTGGGGGTGGGGGCGTGTGTTTCTGGGTCCATCTTCTTTCTTTTTCTCCCAG
Seq C2 exon
GAATGCTGGATAAGCACAGTCTGAACAGGTGTATCTTTGTAAGCCAGCACTGGGCCACTCTGGCCCAGCAGGTCAAGGTGGACCAGTCCATGCACTCCTTCATTCAGAACCAGATTTCTCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090173-Fbxw10:NM_001033669:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064628=F-box=PU(33.3=22.1)
A:
NA
C2:
PF0064628=F-box=PD(64.4=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAAAAGGGGGCATGTCC
R:
GAAGGAGTGCATGGACTGGTC
Band lengths:
249-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: