GgaINT0128986 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NMG9]
Coordinates
chr18:2211372-2211805:+
Coord C1 exon
chr18:2211372-2211578
Coord A exon
chr18:2211579-2211677
Coord C2 exon
chr18:2211678-2211805
Length
99 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTGTCCTCTTTGTTCCTCAGGGC
3' ss Score
11.51
Exon sequences
Seq C1 exon
GTGGGCAAGCACCAGCACTGCGCTTCTGTCCCCCAGCCACCAGCAGCCCCATCCCAGAGGGTCCTGGTGCAGAGGTTGCCTCATCTACTGCGTCCTCAGCCCATGCAGATGTCCATCCACCTCCCACATCTCTCCCATCGCTTTCTCGTGTCACATACAAGGACTTCATTCGCTGCCTGCCGGTTCACCTCTCCCAGTATATCCTGG
Seq A exon
GTAAGGCGTCCCTCATTTCCCAAGGGTGGTTTCCCCTGAGTGCAGCAGGTGGCTTCTCATGTGGATGTCATCCTCTGCTCTGTCCTCTTTGTTCCTCAG
Seq C2 exon
GGCTTTTGGATAACAAATCCCTTAAAACATGTGCCAACGTGAGTAGGTACTGGGCTTTTCTGGCCAAAGAAGTTGAGAAGGAGCATGTGTGTCAAAAAGCAGTACAGAAGAAAATCCTGTATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001323:ENSGALT00000002016:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129372=F-box-like=PU(32.5=18.6)
A:
NA
C2:
PF129372=F-box-like=PD(65.0=60.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCTCATCTACTGCGTCC
R:
CCTACTCACGTTGGCACATGT
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]