RnoINT0060056 @ rn6
Intron Retention
Gene
ENSRNOG00000003287 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr10:49264247-49264676:+
Coord C1 exon
chr10:49264247-49264447
Coord A exon
chr10:49264448-49264548
Coord C2 exon
chr10:49264549-49264676
Length
101 bp
Sequences
Splice sites
5' ss Seq
TAAGTATGC
5' ss Score
2.72
3' ss Seq
CTTTCTTCTTTTCCCCCCAGGGA
3' ss Score
13.23
Exon sequences
Seq C1 exon
AGGCAAAAGCGAAGAGCTCGCTCCACGTTATCTCCGAGATAAATAAGGAGATTTTTGGAAGAGGGGGCACGTCCAGGCTGGGAGATGAGCCGTGCAACCTGCTGCTGAGCCTGGATCATGTCCAACTCCTGTCTTCTGGGTTCAGCAAATACCGGGACTTTATACGTGACCTGCCTCTCCACCTCTCCAAGTACATTCTAA
Seq A exon
GTATGCTGGGTAGATAAGGGGGTTTCTCAGAGACTTCCCATCTGAGCCTAGCTCGGGAGGAGGGGATGTTTCTGGGTTCATCTTTCTTCTTTTCCCCCCAG
Seq C2 exon
GGATGCTGGATAAGAACAGCCTGAACAAGTGTGTCTTTGTCAGCCAGCACTGGGCCACCCTGGTCCAGCAGGTCAAGGTGGACCAGTCCATGCACTCCTTCATTCAGAACCAGATCACTCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003287:ENSRNOT00000091100:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTTGGAAGAGGGGGCACG
R:
GAAGGAGTGCATGGACTGGTC
Band lengths:
252-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]