GgaINT0128986 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:2194666-2194944:+
Coord C1 exon
chr18:2194666-2194717
Coord A exon
chr18:2194718-2194816
Coord C2 exon
chr18:2194817-2194944
Length
99 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTGTCCTCTTTGTTCCTCAGGGC
3' ss Score
11.51
Exon sequences
Seq C1 exon
TACAAGGACTTCATTCGCTGCCTGCCGGTTCACCTCTCCCAGTATATCCTGG
Seq A exon
GTAAGGCGTCCCTCATTTCCCAAGGGTGGTTTCCCCTGAGTGCAGCAGGTGGCTTCTCATGTGGATGTCATCCTCTGCTCTGTCCTCTTTGTTCCTCAG
Seq C2 exon
GGCTTTTGGATAACAAATCCCTTAAAACATGTGCCAACGTGAGTAGGTACTGGGCTTTTCTGGCCAAAGAAGTTGAGAAGGAGCATGTGTGTCAAAAAGCAGTACAGAAGAAAATCCTGTATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001323:ENSGALT00000002016:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129372=F-box-like=PU(32.5=72.2)
A:
NA
C2:
PF129372=F-box-like=PD(65.0=60.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACTTCATTCGCTGCCTG
R:
ACAGGATTTTCTTCTGTACTGCT
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]