BtaINT0001014 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr16:77491582-77492392:-
Coord C1 exon
chr16:77492357-77492392
Coord A exon
chr16:77491643-77492356
Coord C2 exon
chr16:77491582-77491642
Length
714 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGT
5' ss Score
9.27
3' ss Seq
TGTCTCCTGATTTCTCGTAGTTA
3' ss Score
6.73
Exon sequences
Seq C1 exon
GTGCAGGATACATCGTGCTCGTCATTGTTGCTGTAC
Seq A exon
GTAAGTGTCAACAAGTTTGATACCAATGGAATCAAAACATTGCTCTGAAGAAGTGTAGTTTTGTGTTTTTTTTTAGGGTTTTTCAGTATTTATAGCTTTATAGCTTGAAATTAAGTAAAACAGGAAAACCTGACTTTTTACATAATACACTACCTTGTATTAGTATTACTCTATTCCTGTCTATTCTGCCTGTCCACATACTAACAAACTCTAAATAATATATGTTGTTTCAAAGGTGAGTTTTTTTCATATGAGTTTTCATCCCAAATATGCTTTGGGTAATTTTATAAATTAATCAAGAATTTCTCTGACTTACTGTATACTGTTTAATCCAAAGAATACAATATACTGAAGAGTCCAAATGGAATAGAAATGTATATGTGCTTAAATTAGATACCATTTTCTGGCCATGGGTATCTGAAAGCCAAAAATGAAAGCGTTAGTCACTCAGTCATGTCTGATTCTTTGCAACCCCACCAGGCTCCACTGTCTGTTCTAGTCCAGGCAAGAATACTGGAGTGGATTGCCATTCCCTTCTCCAGGGGATGTTCCCAACCCAGGGATTGATCCCAGGTCTCCTGCATTGCAGGCAGATTCTTTAGCATCTGAGCCTCCAGGGAACCTCTGATCAGCATTCATTTTCTTCTGCTAGATTTTGAGTCTTGGCAGCGATTTTTCCTGGTCATGTGACGTTTGTCTCCTGATTTCTCGTAG
Seq C2 exon
TTATTGGCGTTGGATTATTGCTCTGCCTGTACTGCTGTTTTTGCAGACAGAGGAAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005397:ENSBTAT00000007108:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0248011=Herpes_gE=FE(14.8=100),PF041569=IncA=FE(20.0=100)
A:
NA
C2:
PF0248011=Herpes_gE=FE(24.7=100),PF041569=IncA=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development