HsaINT0031168 @ hg19

Intron Retention

Gene

ENSG00000117335 | CD46

Description

CD46 molecule, complement regulatory protein [Source:HGNC Symbol;Acc:6953]

Coordinates

chr1:207958416-207959027:+

Coord C1 exon

chr1:207958416-207958451

Coord A exon

chr1:207958452-207958963

Coord C2 exon

chr1:207958964-207959027

Length

512 bp

Sequences

Splice sites

5' ss Seq

TAGGTAAGT

5' ss Score

9.66

3' ss Seq

TGTTTCCTGGTTTCTTATAGTTG

3' ss Score

7.75

Exon sequences

Seq C1 exon

ATGTTTGGGTCATTGCTGTGATTGTTATTGCCATAG

Seq A exon

GTAAGTATCACAAATTTTGACACCACTTAAGTCAAAAAATTATTGTGAAGACATGCATTTTAAAAATAGTTTTTCAGTTTCTATAGTTTTTTCAGCTTGTAAATTGGTTAAACCGATTTAGGAAAACCTGACTTTTTATTTGATATACTTAACTACCTACCTTGTGTTAGTGATTTTATACTCTGTTATATTCTGTATATCTACTTAGTAACAAAGCCTAAGTAATACATATTTTCTCAAGATGATCAGTAATATTAGTTGGCTTCCCAAATGTGCTTTTGATAGTTTTCTAAATTAAGCAAGGACTTTTCTCTGACTTACTATGGACTGTGTAAGTGATTATGGGGAGTTGGATTTAGATAGCAAAGAGTCTGGATGGAATATAAATGTGTAGGTGCTTAAATAACATTTGACCACTGAAATGTAACCAACATTTATTTCTTCTGCTAGATGTTGAATCTTGGTGATTAGTTTTCAGAATTATATGTCATTTGTTTCCTGGTTTCTTATAG

Seq C2 exon

TTGTTGGAGTTGCAGTAATTTGTGTTGTCCCGTACAGATATCTTCAAAGGAGGAAGAAGAAAGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000117335-CD46:NM_172361:8

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF0248011=Herpes_gE=FE(15.1=100),PF060117=TRP=FE(19.3=100),PF122163=m04gp34like=FE(19.0=100),PF128772=DUF3827=FE(17.2=100),PF054546=DAG1=FE(17.5=100),PF151761=LRR19-TM=FE(19.0=100),PF151021=TMEM154=FE(17.5=100),PF145751=EphA2_TM=PU(18.2=83.3),PF0200911=Rifin_STEVOR=FE(25.0=100),PF0265610=DUF202=FE(26.2=100),PF055686=ASFV_J13L=FE(19.3=100),PF126692=P12=PU(23.3=83.3)

A:

NA

C2:

PF0248011=Herpes_gE=FE(28.8=100),PF060117=TRP=FE(36.8=100),PF122163=m04gp34like=FE(36.2=100),PF128772=DUF3827=FE(32.8=100),PF054546=DAG1=FE(33.3=100),PF151761=LRR19-TM=FE(36.2=100),PF151021=TMEM154=FE(33.3=100),PF145751=EphA2_TM=FE(38.2=100),PF0200911=Rifin_STEVOR=FE(47.7=100),PF0265610=DUF202=PD(45.2=86.4),PF055686=ASFV_J13L=FE(36.8=100),PF126692=P12=FE(48.8=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000313875