HsaINT0031168 @ hg38
Intron Retention
Gene
ENSG00000117335 | CD46
Description
CD46 molecule [Source:HGNC Symbol;Acc:HGNC:6953]
Coordinates
chr1:207785071-207785682:+
Coord C1 exon
chr1:207785071-207785106
Coord A exon
chr1:207785107-207785618
Coord C2 exon
chr1:207785619-207785682
Length
512 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TGTTTCCTGGTTTCTTATAGTTG
3' ss Score
7.75
Exon sequences
Seq C1 exon
ATGTTTGGGTCATTGCTGTGATTGTTATTGCCATAG
Seq A exon
GTAAGTATCACAAATTTTGACACCACTTAAGTCAAAAAATTATTGTGAAGACATGCATTTTAAAAATAGTTTTTCAGTTTCTATAGTTTTTTCAGCTTGTAAATTGGTTAAACCGATTTAGGAAAACCTGACTTTTTATTTGATATACTTAACTACCTACCTTGTGTTAGTGATTTTATACTCTGTTATATTCTGTATATCTACTTAGTAACAAAGCCTAAGTAATACATATTTTCTCAAGATGATCAGTAATATTAGTTGGCTTCCCAAATGTGCTTTTGATAGTTTTCTAAATTAAGCAAGGACTTTTCTCTGACTTACTATGGACTGTGTAAGTGATTATGGGGAGTTGGATTTAGATAGCAAAGAGTCTGGATGGAATATAAATGTGTAGGTGCTTAAATAACATTTGACCACTGAAATGTAACCAACATTTATTTCTTCTGCTAGATGTTGAATCTTGGTGATTAGTTTTCAGAATTATATGTCATTTGTTTCCTGGTTTCTTATAG
Seq C2 exon
TTGTTGGAGTTGCAGTAATTTGTGTTGTCCCGTACAGATATCTTCAAAGGAGGAAGAAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117335:ENST00000358170:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development