BtaINT0001026 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35077365-35077902:+
Coord C1 exon
chr25:35077365-35077515
Coord A exon
chr25:35077516-35077838
Coord C2 exon
chr25:35077839-35077902
Length
323 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGG
5' ss Score
4.09
3' ss Seq
ACGGGAACCTCTGCTTGCAGGTG
3' ss Score
5.99
Exon sequences
Seq C1 exon
GGCCCAGGGCAGCTGATCTCACTCATTGAGGAGACGACCAGCACGGAGTGTCGCCAGGAGGTGGCCACCACCCTGCTCAAGCTCTTCCTGGGGCAGGGACTGGCCAAAGACTTCTTGGACCTGCTCTTTCAGCTGGAGCTGAGCCGCACCA
Seq A exon
GTGAGGCCTGGGAGGGAGTGGCCTGTCAGGGCACTGGGTGGGGGTGGAGGGCCAGGAGCCTAGGACTCCAGGGATGGTCGGAGGGGAGAAATCCCGGAGTCCTCCTGCAGGAGGCCGATGGGTCCAGTTAAGGAGGGAGACGGGTCAGATTTGGAAGTAAAGGAAAAAGCAAAAGGCAGAGATGGGATGCTGAGTTGACAGGTGGCCAGGAGGCTCTTTACTGAGTGGTCAGCAAGGAGCCCCTAGTCCCAAGCTCCTCCATCCTTCTCCCCAAAGCCTTGTCACTCTCCCAACCCCCTATCCACGGGAACCTCTGCTTGCAG
Seq C2 exon
GTGAGGCGAACACCCTGTTCCGGAGCAATTCTCTGGCCTCCAAGTCCATGGAGTCTTTTCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448:ENSBTAT00000007169:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.5)
A:
NA
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAGCTGATCTCACTCAT
R:
CAGAAAAGACTCCATGGACTTGGA
Band lengths:
208-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]