RnoINT0124459 @ rn6
Intron Retention
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23607360-23607842:-
Coord C1 exon
chr12:23607692-23607842
Coord A exon
chr12:23607425-23607691
Coord C2 exon
chr12:23607360-23607424
Length
267 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGG
5' ss Score
4.09
3' ss Seq
CACTGAACTTCTGCTTGCAGGTG
3' ss Score
8.87
Exon sequences
Seq C1 exon
GGCCCAGGACAGCTGATTCCTGTCATTGAGGAGACAACCAGTGCTGAGTGTCGCCAGGAAGTGGCCACCACCCTGCTTAAGCTCTTCCTGGGGCAGGGGCTGGCCAAGGACCTTCTGGACCTGCTCTTTCAGCTGGAGCTGGGCCGCACCA
Seq A exon
GTGAGGCCTGAGAGGACTTGCCCCAGGCAGGGTGGATGAGGCCTTCTTTAGCACATTCAGGGGCCCCTCTAAAGTGCAAGCAAGGCTGTTCCCTCCCTAAAAAGAGTAGTCCAGGTGGGGCAGGTGGGAGATGCTGAGAAAACCATGCACTCAGGGGCTTCTTAGGGACTCCATCCCCGAGGTCCTATTGTCATCCCCGAGGTCCTATTGTCTTCCTGCCTCCAAGGCCTCATCTCAGATCCCTGCCCACTGAACTTCTGCTTGCAG
Seq C2 exon
GTGAGGCCAACACCCTCTTCCGGAGCAATTCTCTGGCCTCAAAGTCCATGGAATCCTTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431:ENSRNOT00000001943:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.5)
A:
NA
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGACAGCTGATTCCTGT
R:
TCAGAAAGGATTCCATGGACTTTGA
Band lengths:
212-479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]