GgaINT0129973 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4171228-4171702:-
Coord C1 exon
chr19:4171549-4171702
Coord A exon
chr19:4171293-4171548
Coord C2 exon
chr19:4171228-4171292
Length
256 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
3' ss Seq
GACTTGCTCCTGTTTCACAGGTG
3' ss Score
9.43
Exon sequences
Seq C1 exon
GCCGGCGGGGTGCACCTGGTCACCCTCCTCGATGAAACCACCACGGCTGAGAGCCGGCAGGACGTCGCCGTCAACCTGGTGAAACTCTTCTTGGGCCAAGGGCTGGTGAAGGAGTTTCTGGACCTGCTCTTTGAACTGGAGCTGGCCAAGCCCT
Seq A exon
GTAAGCCTGGGGGGGGAGCAGGGCTGGGACCGCCTTACCTTCTTTTGGAGCTGTAAAACCTCTGGCGTGCTCTGGTTGGGAACCCGTTGGGTTCATCCCAAGGAAATCAATGGCCAAAGTTGGCTGAAGTTGGTGGAGGAATAGGCAGGTGGTTGGGAAATCCCTGTAACTCCAGTGAAAATGGGCAGGGCGTGGGGGGTGGAAATGCCCGGTGGGTGACCTGGGGCTGCTCCACAGACTTGCTCCTGTTTCACAG
Seq C2 exon
GTGAACCCAACACTTTGTTCCGGAGCAACTCCCTGGCCTCAAAGTCAATGGAGTCTTTCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876:ENSGALT00000002911:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.9=25.0)
A:
NA
C2:
PF0061614=RasGAP=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTGCACCTGGTCACC
R:
AGACTCCATTGACTTTGAGGCC
Band lengths:
204-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]