BtaINT0001030 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35079962-35080441:+
Coord C1 exon
chr25:35079962-35080106
Coord A exon
chr25:35080107-35080271
Coord C2 exon
chr25:35080272-35080441
Length
165 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CTTCCCTCCCTGGCCCGCAGAGC
3' ss Score
11.15
Exon sequences
Seq C1 exon
GCGGTCCAGAATGTGGGCAACATGGACACGCCAGCTTCCAGGGCTAAGGAGGCTTGGATGGAACCGCTGCAGCCCACGGTGCGCCAGGGCGTGGCCCAGCTGAAGGACTTCATCACCAAGCTGGTGGACATCCAGGAGAAAGACG
Seq A exon
GTGAGCCCTTCAGGGCGCGGCCCCGCCCCCTGCCCCGCCCCCTGCCCCGCCCAACTCAGTGCCTCTCGCTACTCCACCCACAGCCCGATGTTGAAGTTTGCTTCGCCCCCGGCCCAGCCCTTGCCGCCCGGGGCTCACGTTTTGCCTTCCCTCCCTGGCCCGCAG
Seq C2 exon
AGCTGGACCTGCAGCGGGCCCTGAGTTTGCAGGCACCCCCGGTGAAGGAGGGGCCACTCTTCATCCATAGGACCAAGGGCAAAGGCCCCCTCACGTCCTCCTCCTTCAAGAAGCTCCACTTCTCCCTTACCACGGAGGCCCTCAGCTTTGCCAAGACCCCCAGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448:ENSBTAT00000007169:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=12.2)
A:
NA
C2:
PF0016924=PH=PU(40.2=75.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCCAGGGCTAAGGAGG
R:
CCGTGGTAAGGGAGAAGTGGA
Band lengths:
248-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]