GgaINT0006286 @ galGal3
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
NA
Coordinates
chr15:11512263-11512739:-
Coord C1 exon
chr15:11512601-11512739
Coord A exon
chr15:11512439-11512600
Coord C2 exon
chr15:11512263-11512438
Length
162 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
CATGGCCACAGCCACAGCAGGTG
3' ss Score
-4.42
Exon sequences
Seq C1 exon
GCACTGCAGAGCATCGGCAACTTGGGGCTGCAGCCGGGCAAGGAGCCCTGGATGGCCCCGTTGCACACCGTCCTGCTGCCCAGCATCACTCGTGTCAGAGCCTTCCTAGACAGCCTCATCGAGGTGGACAGCACCCAGG
Seq A exon
GTGAGCGGGCACGGTGGGCACCACAGAATCCCCCCCCATCCTGGGGATATCACCCCCTATCCTAAGGGATGGGGTCCCCTTCGGAGCATCCTTGCACTGTGGGTGGCGGTGGCACCCCGAAGTGATGTCACTGCCTCCATGCCATGGCCACAGCCACAGCAG
Seq C2 exon
GTGAGGGGATGGTGTCAGCGGCACCTTTCAGTCCCTCGGCCACAATCAAGGAGGGTTTCCTGCACGCACGGGAGGCCGAGGAGCCCTCCCTGCTGCCCCGCTTCGCCTTCAAGAAGCGCTACTTCTGGCTCAGCGCCCAGGCTCTGTCCTACTCCAAGTCCCCCGAGTGCCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.3=12.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGCATCGGCAACTTG
R:
TAGCGCTTCTTGAAGGCGAAG
Band lengths:
256-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]