MmuINT0132018 @ mm9
Intron Retention
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:121121550-121124748:+
Coord C1 exon
chr5:121121550-121121694
Coord A exon
chr5:121121695-121124575
Coord C2 exon
chr5:121124576-121124748
Length
2881 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCTCTTTCTCGATTTCCCAGAGG
3' ss Score
8.66
Exon sequences
Seq C1 exon
GCTGTGCAGAGCATTGGGAACCTGGGCCAGCAGCTGGGCCAGGGCAAGGAGCAGTGGCTAGCCCCGCTCCATCCCTTCCTGCTGCAGAGCATCTCACGTGTGAGGGACTTCCTGGACCAGCTGGTGGATGTGGACGAGGATGAGG
Seq A exon
GTGAGTCCTGTGGTCCTTCCACTCCTGGCTTGTCCCCCCCCCCATCCCCCGGGAGCACTCGATATCCCACTCCCTTAGTCCCCAGTACTAAAACTCTGGACCTGCAGGTCAACTAGTCAGTCAACTAACGTTTTGTGTCGGGCTTGGTTAGGTCATCTCTGCCAATGTAGCAGTGTGGTAGGGTCATGGCATGGAATCTCTGGTATGGGCATGCTCATTAAGTCCCTGTTATGTAACAGGTACCACCCCAAAGGCCTGGGACTGAGAGTTAGTGGAGTCGAGCTTGCTTTGCATGTACGAGGTCCTAGGTTCCACCCCAGCACTAAAAAAAAGAAAGATAAGATAGATTCCCCTGCAGGTTTTTCAGATAAAGTCATTTCATGAGGGAGAAATGACTCAGTGGGTAAAGTGCTGAGCAAACTTGAGGATCTGAGTTCAAATTCCCAGTCACCTAAAATCCAGGCCTGGCTGTGCCTGCTAATAGCCCTGGCCTTGGAGGTGTGAAGACAGGCAGATCATCCGGGATTCCCTGGCCAGCCACTGTAGTCAAAATGGTGAGCTCCAAGCTCAACAAGTGGCTCAGTCTCAAAGAATAAATTGGGGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTGGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCAAAACACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAAATTGGGGAGCAACAGAGAAAGACTCCAGATGTCGTCCTCGGGTCTCCACATGCACACACGTACACACAATACATACACCCATGCACACATGCACGCAAATGCAGATATGGACACACACGTACAAATGCACACACGATACACACATGCAGACGTGTGCATACATGTACAAAGGCACACATATGTACAAATATATACATGCATTTATATACATGCACACACATGCATGCACATGCACAAGACATACACACATGCAGAGACATACACACACATGTACAAATATACACACATGCATACACTTGTATATACATGCATACAAACACACACATATGCACACACATGCATGCACCACACATACCAAAAAAGGGAGTGAGACAGAAGAAAATCCTGGACTTATTCATAGAATCTCACTCTCATGGGGACCATGTTGTAAGACAATTATCAAGGGCTGAGGCGTGGTGGCACAGGCCTTTAATCCCAGCACTCGGGAGGCAGAAACAGTCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGAGAATTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTCAAAACAAAACAAACAAGATAGCAAATAAAACAACCAGGCTGGAGAAGGGACTCAGTGGTTGAGAGCACTGGCTGCTCTACCAGAAGACCTGGACTTGTTCCCAGCTCCTACATGACAGCCCACATCTGTCTGTAACTCCAGTTCCAGGGGGTCTGACACCCTAACACACACACATGCAGGCTAAACGCCAATGCGCATGAAATAAAAATAAATAAAACCACTAAAAAATTATTGAAAAAAAAACCACCAAAACCAATCCAAACTATGCAACCAACAACCAAATAAACAGAAAAGACAATAGCCAAGTTGATGGGGTGTCAGGGAGTTACCAAGGAAGGGAGAAGGGGGGGGCTTGGGAGGGCGAAGGCGGTGTCCACATCTTTATTCCCAACATTCAGGGGGCAGAAACAAGAGAGGCCTGGTCTATGGAGAGTTCTAGGCCAGGCAGGGTGTCACAGTGAGATCCAATCTAATGAAAGAGAGGGAAGGAAGATGAAAAGACAGGGAAGAGAAGAGATGGCCCAGAGATGGCCCGAGTGGGCCTCCCTGGTGCCACTAGAATGACACTCTGGAGTATGTGCTGTGACTCTTTTGGAGTGTTGTTTAATTGACACCAGCTCCCGTACGGGGACGCTGCCCCGTGCCCCAAGAATGGAGTCAGAGTTTATCTGGACTGCTGCTTTATTTATTTATTTTTCCTCAAAGTCCCCCTCCTCTGACTCACCAAGCACCAAGCACCTGTCTACTCAAGCGCGGATGCAACGTTGGGTTCAGAGCGCCACCTAGTGTCAGTGCTGTGGAATGACTGCGAACTCAGGCAACCGGGCACAGACCCAAACCAGGACTTAAACACACTCCAGTTTGCTCTTATCAGAGATTCTCCTGGCCTCAGAGATAGCGATGGGGGCGAGGATGGCTTCTTTGGGGCTTCTGTCTGGGCAAGCAGAATAGTTAAATGGCATCTTGGTTCAAGATGGAGTCACTCTGGCTGAGATTTGGAGAACCAGTGTCAATGCCAGAGTGAGCCAGGCAGGGGAAACAGCACGTGCAAAGGCCCTGGGGTGGGAACAGAGGACAAGAGATGAGAGAAAGAGAAAGGGGTTAAAGAAAGAAAGAAGTGGGGTGCTAAAAAGCTGTGGCAGAACTGGGGCTTGTTTGGGAGTGGTGCCGTGTAGCCCTCGGAAATAGAGGACTTGGGGTGGAGGGCACGACAGAATGGGGGGCTCAGATCACATAGGGGTAACCTGGGCAGTGGAGAGCCCTGGTTGTGGTGGTCTGGGGGTGAGGTGGGGTATCTGGGACAGAGAGAGGTCTGCAGCCTGGAGCTTGAGGCTGTCTGAGACATCACTGGATTGACTAGGACAGCTGCAGTCTCACAAGCAGGGCCCTGAGAGAGGCCTGGGTTCCACTTTCCCCAGCTGCTAACCCCTCCTTGTCACAGCGGGTAGGACTTCCTGCCCCTTGGCAGGTGCTAGAGACCCCAGAGATGGCAGAGTCCCACACCCTCTTTCTCGATTTCCCAG
Seq C2 exon
AGGCCGGGGGTCCAGCCTGCGCCCTGGTCCAACCCTCAACCATTGTTCGAGAAGGCTTCCTGCTGAAGCGCAAGGAGGAGCCTGGAGGCCTGGCCACGCGCTTTGCCTTCAAGAAGCGCTACTTCCGGCTGAGTGGGCGGGACCTCTCCTACTCCAAGACTCCGGAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-Rasal1:NM_013832:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=12.2)
A:
NA
C2:
PF0016924=PH=PU(40.2=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: