HsaINT0137681 @ hg19
Intron Retention
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:9873]
Coordinates
chr12:113543519-113545046:-
Coord C1 exon
chr12:113544902-113545046
Coord A exon
chr12:113543692-113544901
Coord C2 exon
chr12:113543519-113543691
Length
1210 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTCTTCTCCCATCTCCTAGAAG
3' ss Score
8.75
Exon sequences
Seq C1 exon
GCTGTGCAGAGCATTGGAAACCTGGGCCAGCAGCTGGGCCAAGGCAAGGAACTGTGGATGGCCCCCCTGCACCCCTTCCTGCTGCAGTGTGTCTCACGTGTGAGAGACTTCCTGGACCGGCTGGTGGATGTGGATGGGGATGAAG
Seq A exon
GTGAGTTCCTGTGGTCCGGCCACATCTGGCTTCTCAGCCCAGTTGAGACACCACTCAGGGACTTCCCCTTTCCCCCTCCAGCTCCTCAGCACTAAGAATGTGAATCTGTGGGTCAGTCAACTAACATTTCCTGATACTTACTGTGCTAGGCCCCAGAGATGAACAGAGCTCAGGTGCTGTCCTCCAGGCCCATCCCCAGCCAGTGTGGGGATATGGCTGTGGGCAGGATCGTGGCATGGTGTGCATGCCATTGACAAACATCTATTAAGCGCTTACTAAATAACAGGCACAGTTCTAGGTGCTGGGGATGCAGCAGTGAACAAGACAGAGAAAATCTGATCTCACAGAGCTTTTATTTTGTTGGGGACCACAGGCCATTAGCAAGATAAATAAGCAAGTTATGTGGTATGTTAGAGAGCTGTAAGTGCTAAGAAGGAAAAAAAAAAGGAGGAAAGAACAGAGATCTGAAAGGGAAAAGTTAGAGAGCCTTGAGGATCCTGGGGAAGAGTGTGCCAGGCAGGGCACAGCATGTGCAAGGGCCCTGAGGTAGGACACAGAGCAGCACTGAGGACACCCGTGAAGAAGAGTGAACTGGGGGCAGTGGGGAGGCAAAGAGGCAAGGCCAGAGAGGTGAGGGGGCCAGATCCTGTGGGGCCTCATAGGCCTTGGGAAGAATTTTAGCTTTGACTTGGAGTGAAACAGAATCACAGGATGATTTGTAGCAGGAAAGTTGTGGTTGAGTCCATACCATAATGTGGGGCTCAGGTCATAACCTAGTTGGATCCCAGTCCCATTGAAGCAACCTGTCAGAACGTAGAACCTGGCTGTGGCATGGTGGGGTCCCTATGGTGCTGGGGTGGGGTGGCGGGGCTGTGTCCTGGCTCCCTGAGCATGATTAAATGCTGGACATTGCCTGGATGGGACCCCATAGGGTGTGGCTGCCCCTGCTGGCTGCCTGCATACTGTCTGCAGATTTCTCTGGTTGGAGAGAGGTCTTCAAGGGCTACTCTGCCCTCCCCCTCCTCCCAGCCTCCATGATTGCATCCCCTATTGAGGGAGTGGTCTGAAGTCATCGCGCTCATCCTCCTGCCTCTAGGGGAGCAGAGAACCATGCCCGTCCACTGAGGTCCTCCCTGGGCATGCTAGTGGAGCAAGGTGAGCCTGGTTAGGGAGGGCTCACTGTCCACCGCTCTCTTCTCCCATCTCCTAG
Seq C2 exon
AAGCTGGTGTCCCAGCCAGGGCCCTGTTCCCGCCCTCGGCCATTGTTCGAGAAGGCTATCTGCTGAAGCGCAAGGAGGAGCCTGCCGGCCTGGCCACGCGCTTTGCCTTCAAGAAGCGCTACGTCTGGCTCAGCGGGGAGACCCTCTCCTTCTCCAAGAGTCCTGAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344-RASAL1:NM_001193520:16
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=12.2)
A:
NA
C2:
PF0016924=PH=PU(40.2=75.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGCAGAGCATTGGAAAC
R:
CTGCCACTCAGGACTCTTGGA
Band lengths:
318-1528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)