BtaINT0122599 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63401818-63403581:-
Coord C1 exon
chr17:63403437-63403581
Coord A exon
chr17:63401991-63403436
Coord C2 exon
chr17:63401818-63401990
Length
1446 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCCCTCTTCCCATTTTCCAGAGG
3' ss Score
9.09
Exon sequences
Seq C1 exon
GCTGTGCAGAGCATTGGAAATCTGGGCCAGCAGCTGGGCCAGGGCAAGGAGCTGTGGATGGCCCCCCTACACCCCTTTCTGCTGCAGAGTATTTCCAGGGTGAGAGACTTCCTGGACCAGCTGGTGGAGGTGGATGGGAAGGAGG
Seq A exon
GTGAGTTCCCATGGCCCTGCTACAGCCAACTTGTCACTCTACGGGACCCTCAGGACCTACCCGTCCACCACCCCTCCCCAACCCCAGCACTCACCGAGACTGTGCACCTGTGGGTCAGCTAGTCAGTCAACGAACGCTTCCTGGTATATACTGTGTTAGGACCCAGGGATGAACAGATGCAGGCCCTCCAGACTATTTCAGCCCCTATGGAGATGTGAGAGGGGATCGTGGCATGGTACTTACTCCATCGATAGCTATCTATTAAGTGCCTGCTATGTCCTAGACACCGGTCCAGGGTCTGGGGACACAGCAGTGGGTGGGTGAGACAGAAGAAGCTCCTGCTCATGTGGAAGTTTTATTCTAGTGGAGACAGTAGGCAGTAAACAAGATGAGTTAGCAAATCATATGGTGTGTTAGGAAGAGATAAGTGCTAAGGAGAAAAAATAAAGGAAGGAAGGGAATATTGGGCTGGGGGTGGCAGATCAGCCTTTTAGAGAGGGTGGCCAGGAATGGCCTCCCCAGGGTGATATTAGAGCAAAGACCTGAAAGAGAACAGAGAGGAAGCAGTGAGGATCCTGGGCAAGTGTTTCAGGCTGGGGACAGTGTGTGCAAAGGCCCTGGGGTGGACAGTGAGGGGGCGCCAGTGAAGAAGAATGAACGAGAGGGAGTGGAGGAGAGGTGAGGGGGCAGGTCGTGTGGGGCTGCTGGAAGGATTTAGGCTTTTACTTGGAGTAAGTGGAGCCACAGGGTAGATTCATTTTATTAATATTTAAGTATTTATTTATTTGGCTGCGTCAGGTCTTAGTTGCGGCATGTGGGCTCAGTAGTTGTGCAGGCTTAGTTGTCCTGAGGCATGTGGGATCTTAGTTCGCTGACCAGGAATCGAACCTGTGTCCCCTGCATTGGCAGGTAGATTCTTAACCTCTGGACCCCCAGGGAACTCCCCATGGGATAGTTTTAAGCAGAGGAGTTAGGGATGAGTCTATATCATAATGTGGGGCCCAGGTCATGAAATACTTGGGTCCAAATCACCTAGAAGCACCCTGTGGAAATGTGGAGGCCTGGTTGTGACCTGGTGGGGTCCCTGTATGCTGGGGGTGGGGGGGCCTGTGTCTGGATCCCCTAAGGGTAGCTAGATCCAGGGCATAGTGACTAGCATCCAGTCACTCCCTGGACTGACTCCGTAAAGCGTGGCTCCTCCTGCTGGTGCCTGTACATCCCTCAAGTTGGAAAGGGATCACCAAGGCCAACTTTGGGGCCCCCACTCCCTGCCACCCCCATTCCCTTCCCCAGCCCTCAATAATACCATTCTCTTTGGAGAAAGTAGAGTCCATCTTATTCATCCTTCCGCCTCTCGGGGGGCCAAGAATCCCACTCCTCCATGAGACCCTCGGAAGGTGGAGCCTGGGTGGGAAGGGTTCCCAGTCCCCTCTTCCCATTTTCCAG
Seq C2 exon
AGGCTGGGGGCCCAGCCAGGGCCCTGGTCCCGCCCTCAATGACTGTCCGAGAAGGCTACCTACTCAAGCGCAAGGAGGAGCCTGCCGGCCTGGCCACACGCTTTGCCTTCAAGAAGCGCTACTTCCGGCTCAGCGGGGAGATGCTGTCCTACTCCAAGAGTCCTGAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739:ENSBTAT00000022254:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=12.2)
A:
NA
C2:
PF0016924=PH=PU(40.2=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGCAGAGCATTGGAAAT
R:
CTGCCACTCAGGACTCTTGGA
Band lengths:
318-1764
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development