RnoINT0124464 @ rn6
Intron Retention
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23604739-23605504:-
Coord C1 exon
chr12:23605360-23605504
Coord A exon
chr12:23604909-23605359
Coord C2 exon
chr12:23604739-23604908
Length
451 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
3' ss Seq
TGCCTATTTCTTGCTTTCAGAGC
3' ss Score
10.35
Exon sequences
Seq C1 exon
GCGGTCCAGAACATAGGCAATATGGACACACCGGTCTCCAGGGCCAAAGAGTCGTGGATGGAACCACTACAGCCTACTGTGCGCCAGGGTGTGGTGCAGCTGAAGGACTTCATTACGAAGCTCGTGGACATAGAAGAAAAGGAAG
Seq A exon
GCAAGGACTTCACCACCTTCATCGCCTAAGACCTGTGTGCAAGTTTGTTACGTGACCCCGCCAGTGCCCTGCCCACCAAAACTAAGCCCAACCCCGGCCTTTTGTTTTGTTTTAGAAGGGTCTCAAGTAACCCAGGGCTGGTCGTAAACTCACTACCAAGGATAACCTTAAATCCAATCTCCCAAAGGCTGAGATAATAGGCATGTGCCACCAAGCCCGGGTTTCTGTGACGCTGAGTCTAACTCAGGCTCTTTCCATGCTCGGCAAACATCGCACCATCCGAGCTTCCTCCCCAGCCCTTTTCCCACAGGACCCCGCCCACCGCTAGTCACAGCATCCGGTTTGCCTTAGCTACTCCGGAGTTCAACTCTACTCCAGTTGGTCTTAGCCCCTCCCCTAATCTCCCCCGTCCTTTGATAGCCAGGCTTTCCTGCCTATTTCTTGCTTTCAG
Seq C2 exon
AGCTGGACCTGCAGCGGGCATTGAACTTGCAGGCTCCGCCTGTGAAGGAGGGACCACTGTTTATCCACAGAACCAAAGGCAAAGGCCCTCTTGCGTCCTCCTCGTTCAAGAAACTCTACTTCTCTCTTACCACTGAAGCCCTCAGCTTCGCCAAGACATCCAGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431:ENSRNOT00000001943:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=12.2)
A:
NA
C2:
PF0016924=PH=PU(40.2=75.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTCCAGAACATAGGCAAT
R:
CTTGGAGCTGGATGTCTTGGC
Band lengths:
315-766
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]