BtaINT0001031 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35080272-35081048:+
Coord C1 exon
chr25:35080272-35080441
Coord A exon
chr25:35080442-35080910
Coord C2 exon
chr25:35080911-35081048
Length
469 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCCTGTCCCCGTCCCCCTAGAAA
3' ss Score
11.17
Exon sequences
Seq C1 exon
AGCTGGACCTGCAGCGGGCCCTGAGTTTGCAGGCACCCCCGGTGAAGGAGGGGCCACTCTTCATCCATAGGACCAAGGGCAAAGGCCCCCTCACGTCCTCCTCCTTCAAGAAGCTCCACTTCTCCCTTACCACGGAGGCCCTCAGCTTTGCCAAGACCCCCAGCTCCAAG
Seq A exon
GTGGGTGAGGGCACCAGAGGGTAAGAGGGGCTCTGAGGGGTTGGAACACCCTGGAGGCACCTGTCCCTTCCTCTTAGCCCACCTCAGGGACCACCGGGGTCGGAGAAGAAAGCCAGGCAGGGGCCGGCTCCTGGTGGCAGCCATAGGGTGACTTAAGACCTGTGAGGAAGAAGGTCCTCTTTCTAGGGGGTCCTGGGGTGGGCCGCGGCTGCAGTGTCTGGCCCTGGCTTCTTGGTCAGGGGTGTGCGTGAGTTGGGCACTGAGGCATGCTCAGGCCCCCAAGAGGCCAGGTTGAGTGCTTGTACTCTGTCCTGGCTGAGGTCACTCTCAGAGCAGACTCCTGGGAGGGTGGGTCCTCTGGATCCCCAGTGCCAACCCCTGGTGCTGCGGAAGGGGAGACTGAGGCCCAGAAATAGGAAGGGGAGTGACCTCGGCCTGCGCCTCCCTTCCCCTGTCCCCGTCCCCCTAG
Seq C2 exon
AAAAGCACCCTCATCAAGCTCGCCAACATCCGGGCAGCAGAGAAGGTGGAGGAGAAGAGCTTCAGCAGCTCCCACGTCATGCAGGTTATCTACACGGATGATGCGGGCAAGCTCCAGACCGCCTACCTGCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448:ENSBTAT00000007169:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.2=75.4)
A:
NA
C2:
PF0016924=PH=FE(42.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCCCTGAGTTTGCAG
R:
CTTGCACTGCAGGTAGGCG
Band lengths:
294-763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]