MmuINT0131998 @ mm9
Intron Retention
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136579707-136580523:+
Coord C1 exon
chr5:136579707-136579876
Coord A exon
chr5:136579877-136580385
Coord C2 exon
chr5:136580386-136580523
Length
509 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTTTTTCTGGCTGCCCCAGAAA
3' ss Score
7.85
Exon sequences
Seq C1 exon
AGCTGGACCTGCAGCGGGCTTTGAACTCACAGGCACCACCTGTGAAGGAGGGACCATTGTTCATCCACAGGACCAAAGGCAAAGGCCCTCTTGCATCCTCCTCGTTCAAGAAACTCTACTTCTCCCTTACCACTGAAGCCCTCAGCTTCGCCAAGACGTCCAGCTCCAAG
Seq A exon
GTGAGCGAGCAGGAAGGCTTTCTGGGATGGTGTTTGTTTGTAGGCCCAGCAATTGGGAGGTGGAAGCAGGAGGCCCAAGACTTCAAGTCCAGCCTCAACGACATAGATAGCTCAAAGCCAGAGTGAGACCCTGTCTCAAAACAAAATGGCAAACAGGACTATAACTTATTGGACAGAGTACTTACAGGGTCGGGTACTTTAGCACACTGGCTGTTCTGCAAACCTTCCTGGATGCAAACCCTAAAAGCAGGTTTAGCCTCAACACCTGGCGTCTTAGCTGTAAGTCTGATGCTTAGGAACCCGCCCAATCCAGCGCGTTAGGCGCTCCCCTCCCAGGGGCCTGTTCTTGACTCTGGCTGAGATCCCTTCACAGAGCAGGCCACTAGGAACAAGAGGGGAGTTGTTCAGGTCCCTCACTGTAAGTCCTAATGCCACCTGCCAGGGATGTGGAGACCAGATAAGAAAGTAGAGCAACATGGCCTCAGCCTCTTTTTTTCTGGCTGCCCCAG
Seq C2 exon
AAAAGCACCTTCATCAAGCTGGCCAGCATCCGGGCTGCGGAGAAGGTGGAGGAAAAGAGCTTCGGCAGCTCCCACATCATGCAGGTCATCTATGCAGATGATGTTGGCCGTGCCCAGACTGTCTACCTGCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952-Rasa4:NM_133914:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.2=75.4)
A:
NA
C2:
PF0016924=PH=FE(42.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCAGCGGGCTTTG
R:
CTTGCACTGCAGGTAGACAGT
Band lengths:
303-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: