GgaINT0129978 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4169668-4170192:-
Coord C1 exon
chr19:4169878-4170192
Coord A exon
chr19:4169806-4169877
Coord C2 exon
chr19:4169668-4169805
Length
72 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CACTGCGTCCCCAACGGCAGAGG
3' ss Score
4.17
Exon sequences
Seq C1 exon
GCTGTGCAGATGGTGGGCAACATGGAGCCAGCGGCAGGGCGGGCCAAGGAGGAATGGCTGGCCCCGCTACAACCCGCCCTGCAGCACGGAGCCTCCCGCATGAGGGCCTTCATCACCCGGCTGGTGGGCACGGAGGAGGAGGAGGAGGGCGGAGAGGGGTGGCCGTGCGCCCCCCGCGCTGCCGTGGTGAAGGAGGGGCTGCTCTTTGTCCACAAGACGCGGGGCAAAGGGCCGCTGCTTGCCTCCGCCTCCAAGAAGCTGCACTTCTGCCTCACCGGAGAGGCCCTCAGCTTCGCCAAGAGCCCCGGGGCGGAG
Seq A exon
GTAGGGGGATGTGGGGTGGGGGGGATCCCGCGGTGGCACGGAGGGCACCGAGCACTGCGTCCCCAACGGCAG
Seq C2 exon
AGGTGCGGTTCCATCGCTTTGGCCAACATCCGCGCGGCCGAAAGGGTGGAGGAGAAGAGCTTCGGGAGCTGCCACGTCATGCAGGTGGTCTACGTGGATGAGGCCGGGCAGCAGGAGACGGCGTACCTGCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876:ENSGALT00000002911:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=5.7),PF0016924=PH=PU(40.2=41.0)
A:
NA
C2:
PF0016924=PH=FE(42.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTCTTTGTCCACAAGA
R:
GAAGCTCTTCTCCTCCACCCT
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]