RnoINT0124465 @ rn6
Intron Retention
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23604069-23604908:-
Coord C1 exon
chr12:23604739-23604908
Coord A exon
chr12:23604207-23604738
Coord C2 exon
chr12:23604069-23604206
Length
532 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTTTTTTCTGGCTGCCGCAGAAA
3' ss Score
8.85
Exon sequences
Seq C1 exon
AGCTGGACCTGCAGCGGGCATTGAACTTGCAGGCTCCGCCTGTGAAGGAGGGACCACTGTTTATCCACAGAACCAAAGGCAAAGGCCCTCTTGCGTCCTCCTCGTTCAAGAAACTCTACTTCTCTCTTACCACTGAAGCCCTCAGCTTCGCCAAGACATCCAGCTCCAAG
Seq A exon
GTGAGCGAACAGAGAGGCTTTCCGGGATGGTGCTTGTTTGTGAGCCCAGCAATTGGGAGGTGGAAGCAGGAGACCCAGGACTTCCAAGTCCAGCCTCAACTACATAGACAGTTCAAAGCCAGATTGGGCTCCGTGAGACCCAATTTCAAAACAAAATGACAAATAGGACAAATTCTTCTTATTGGGCAGCATACTTGCTGGGTAGTGTATTAGCACACTGATTGTTCTGCAGACCTCCGTGGACAAAACCCTTAACACATGGCATTAACCCTTAACATTTACCCTCAACACATGGCATCTAGCTGTCAGTCTGATGCTCAGTATTAGGTGCTCCCCTCCCAGGGGCTTGGTGTTTGTTCTTGACTCTGGCTGGGATCCCTTCACAGAGCAGGCTGCTAGGAACAAGAGGGGACTTGCTCAGATCCCTTCCTGTAAGCCCTAATGTCACCCACTGAAGGGGATGTGGAGGCCAGATAAGGGAGTAGAGCAACATGGCCCGGCCCCCTCAGGCTCTTTTTTCTGGCTGCCGCAG
Seq C2 exon
AAAAGTGTCTTCATCAAGCTGGCCAGCATCCGGGCTGCGGAGAAGGTGGAGGAAAAGAGCTTCGGCAGCTCCCACGTCATGCAGGTCATCTACTCAGACGATGTTGGCCGGGCCCAGACTGTCTACCTGCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431:ENSRNOT00000001943:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.2=75.4)
A:
NA
C2:
PF0016924=PH=FE(42.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGGCATTGAACTTGCAG
R:
TGCACTGCAGGTAGACAGTCT
Band lengths:
294-826
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]