BtaINT0001037 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35070858-35071514:+
Coord C1 exon
chr25:35070858-35070971
Coord A exon
chr25:35070972-35071452
Coord C2 exon
chr25:35071453-35071514
Length
481 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GTTCCCTCTCCACCCTCCAGCCG
3' ss Score
7.56
Exon sequences
Seq C1 exon
GACAGCCACTGTGTGGAAGACCCTGTGCCCCTTCTGGGGCGAGGAGTACGAGGTGCACCTGCCGCCCACCTTCCACTCAGTGGCCTTCTACGTCATGGACGAGGATGCTCTCAG
Seq A exon
GTGGGCGCAACCGCGCTCCCCATCCCGGGCCCGGACCCCGCCCCTGTCCCTCTCTGGGACTGCGGGTCACTTTGCCTCCTCTTTACAGCCTGGAAGGAGGGGGAGCCCAGGGGACCTGCAGGGCACAGGGCTTAGATGTGCAGTGTCTGTGTCCGTGTGTGTGGATTCACTATGCTCACACCCCACCACGCGTGCATGTGTGTGCTGCGCTGTGTGTGCATGGGGATGTGAGCTTAGAAACAGGCACCCGGAGAGAAGAGCTGGGCATGTAGGTGGGCACATGCGTAAGTCCACGTGCAGACACATGCCCCTGAGAGGGCCTGCCAGAGGGTCACGGGTCCTGCTCCATGTAGGCTCCTGTAAGTGACCGCACTGTCAGCCTCCCTGCTCCCAAGAGGGGCCCTGAAGGGGGTGGGGTGGGTTGGGGGTCTCTGGTTCTGCACCAGCCCTGCCCAACTCGGGTTCCCTCTCCACCCTCCAG
Seq C2 exon
CCGGGATGATGTCATTGGGAAGGTCTGCCTTACCAGGGACACGCTGGCCGCTCACCCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448:ENSBTAT00000007169:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
NA
C2:
PF0016825=C2=PD(11.0=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]