RnoINT0124471 @ rn6
Intron Retention
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23616789-23617519:-
Coord C1 exon
chr12:23617406-23617519
Coord A exon
chr12:23616851-23617405
Coord C2 exon
chr12:23616789-23616850
Length
555 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
GAGTCTCTCTCCACCCCTAGCCG
3' ss Score
6.97
Exon sequences
Seq C1 exon
GACAGCCACTGTGTGGAAGACCCTGTGCCCATTCTGGGGTGAAGAGTACCAAGTACATTTACCCCCCACATTCCACATGGTGGCCTTCTATGTTATGGATGAAGACGCCCTTAG
Seq A exon
GTAAGTCTGCTGCTGGACCAGGATGTGACCATCGCTGTGACCGCTGGTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCTTTGCGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCAACTGCTGGTCTCTTTGCATATCCTCTCTGTAACCTGGTGGGGATACTGAGAGGGGTCGGGGAGAGGTGGGACGGAGCTCGAGTACTGACTTGGTGCACACGAATGCTTGCCTTATGCATTTGTGTGCACCCGTGGGCACAGGTGGGCGTAGGCGCCAGGACCTATGAAGTGGGCACCCACGGGGCATGAGTTTGGTGTGTGGTAAATCTCACGTGCAGAAATGAGTCATGTACCATGAGTGTCCACAGCCTGCGCAGGCGTTTCGTGTTCTGCTCCACGGAGCTGTCCTGTGGCTGATGGCTTTCTGGAGGCTGGAGGCCGAGCTGTAAGGGCTGAGTTTGCTGCGCTCCAGGCAAACTGGTTTCATAGCTTAACTCTGAGTCTCTCTCCACCCCTAG
Seq C2 exon
CCGGGACGATGTGATCGGGAAGGTCTGCCTCACAAGGGATGAGCTAACCTCTCACCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431:ENSRNOT00000001943:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
NA
C2:
PF0016825=C2=PD(11.0=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]