GgaINT0129966 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4172859-4173231:-
Coord C1 exon
chr19:4173118-4173231
Coord A exon
chr19:4172921-4173117
Coord C2 exon
chr19:4172859-4172920
Length
197 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CTCCCCCTTGTCTCTTGCAGCCG
3' ss Score
12.11
Exon sequences
Seq C1 exon
GACTGCCACGGTGTGGAAGACGCTGTCCCCATTCTGGGGGGAAGAGTATGAGGTGCAGCTCCATCCCACCTTCCACAGCATCTCCATCTATGTCATGGATGAGGATGCGCTCAG
Seq A exon
GTACAGGCAGAGCGCTTTGGGGACAATGCAGCGTTGGGTTGGGAAAGGCAATGCTCAACCTCATAGCAGACAGCAGAGAATCCACACCTGGCTGTGCAGTTGAGGGCTCTGGGACTGCCTGGCGGCAAGGGGTGGCCAAGGAGCTCTGTGCCCCCTTGGTATCACCCTCTGTGCCACCTCCCCCTTGTCTCTTGCAG
Seq C2 exon
CCGCGATGATGTTATTGGGAAGGTGTGCATCACCCGCACCATGCTGGCAGAGCACCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876:ENSGALT00000002911:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
NA
C2:
PF0016825=C2=PD(11.0=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGTGTGGAAGACGCTG
R:
CTTTGGGGTGCTCTGCCAG
Band lengths:
170-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]