GgaEX0002280 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4172367-4173231:-
Coord C1 exon
chr19:4173118-4173231
Coord A exon
chr19:4172859-4172920
Coord C2 exon
chr19:4172367-4172448
Length
62 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTTGTCTCTTGCAGCCG
3' ss Score
12.11
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GACTGCCACGGTGTGGAAGACGCTGTCCCCATTCTGGGGGGAAGAGTATGAGGTGCAGCTCCATCCCACCTTCCACAGCATCTCCATCTATGTCATGGATGAGGATGCGCTCAG
Seq A exon
CCGCGATGATGTTATTGGGAAGGTGTGCATCACCCGCACCATGCTGGCAGAGCACCCCAAAG
Seq C2 exon
GGATTTGGCCAAGAAGGACCGGAACGGTGCATCCGACCCCTTTGTCTGTGTGAGCTACAATGGCAAAACGCAGGAGAGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
PF0016825=C2=PD(11.0=40.9)
C2:
PF0016825=C2=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAAGAGTATGAGGTGCA
R:
CTCACACAGACAAAGGGGTCG
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]