MmuEX6021649 @ mm9
Exon Skipping
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136567064-136569137:+
Coord C1 exon
chr5:136567064-136567177
Coord A exon
chr5:136567618-136567679
Coord C2 exon
chr5:136569008-136569137
Length
62 bp
Sequences
Splice sites
3' ss Seq
GACTCTCTCTCCACCCCTAGCCG
3' ss Score
8.56
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GACAGCCACTGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAAGACTACCAAGTACACTTGCCCCCCACGTTCCACACGGTGGCCTTCTATGTCATGGATGAGGATGCCCTTAG
Seq A exon
CCGGGACGATGTGATCGGGAAGGTCTGCCTCACGAGGGACGCGCTAGCCTCTCACCCAAAGG
Seq C2 exon
GATTCAGTGGATGGACCCACCTGGTGGAGGTGGACCCGAACGAGGAGGTGCAGGGTGAGATCCACCTGCGCCTGGAGGTGGTGCCAGGGGTCCATGCCAGCCGGCTGCGCTGCGCGGTGCTTGAGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
PF0016825=C2=PD(11.0=40.9)
C2:
PF0016825=C2=PU(9.8=18.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTGGGGTGAAGACTACCA
R:
GATCTCACCCTGCACCTCCTC
Band lengths:
147-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: