DreEX0060976 @ danRer10
Exon Skipping
Gene
ENSDARG00000029372 | rasa4
Description
RAS p21 protein activator 4 [Source:ZFIN;Acc:ZDB-GENE-060526-349]
Coordinates
chr5:58628128-58656690:+
Coord C1 exon
chr5:58628128-58628241
Coord A exon
chr5:58634231-58634292
Coord C2 exon
chr5:58656558-58656690
Length
62 bp
Sequences
Splice sites
3' ss Seq
AAAAACTGCTCTTTTCACAGCCG
3' ss Score
6.77
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GACAGCAACAATATGGAAGACACTTTCTCCGTTTTGGGGTGAAGAATACACTGTCCATCTTCCTCCCTACTTCCGCACAGTCTCTTTTTATGTGCTGGATGAAGACTCTCTCAG
Seq A exon
CCGGGATGATGTCATCGGGAAGGTGTCAATCACTAAGGAGGTGCTCTCCGCCAAACCGCAAG
Seq C2 exon
GTGTTGACGGATGGATGAACCTAACAGAGATTGACCCAGATGAGGAGGTGCAAGGGGAGATTCACCTCCAGATCTCAGTGCTGGGAGATGGAGATATCCCACGGAAACTGTGCTGCCAGGTCCTAGAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029372-'3-4,'3-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
PF0016825=C2=PD(11.0=40.9)
C2:
PF0016825=C2=PU(9.6=17.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTACTTCCGCACAGTCTC
R:
TCCCAGCACTGAGATCTGGAG
Band lengths:
137-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]