RnoEX6063928 @ rn6
Exon Skipping
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23615549-23617519:-
Coord C1 exon
chr12:23617406-23617519
Coord A exon
chr12:23616789-23616850
Coord C2 exon
chr12:23615549-23615678
Length
62 bp
Sequences
Splice sites
3' ss Seq
GAGTCTCTCTCCACCCCTAGCCG
3' ss Score
6.97
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GACAGCCACTGTGTGGAAGACCCTGTGCCCATTCTGGGGTGAAGAGTACCAAGTACATTTACCCCCCACATTCCACATGGTGGCCTTCTATGTTATGGATGAAGACGCCCTTAG
Seq A exon
CCGGGACGATGTGATCGGGAAGGTCTGCCTCACAAGGGATGAGCTAACCTCTCACCCAAAGG
Seq C2 exon
GATTCATCGGATGGACCCACCTGGTGGAGGTGGACCCGAACGAGGAGGTGCAGGGTGAGATCCACCTGCGTCTGGAGGTGGTGCCAGGGCTCCACGCCAGCCGGCTGCGCTGCTCTGTGCTTGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
PF0016825=C2=PD(11.0=40.9)
C2:
PF0016825=C2=PU(9.8=18.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGTGGAAGACCCTGTG
R:
CCAGGTGGGTCCATCCGAT
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]