MmuINT0132004 @ mm10
Intron Retention
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136091194-136091809:+
Coord C1 exon
chr5:136091194-136091307
Coord A exon
chr5:136091308-136091747
Coord C2 exon
chr5:136091748-136091809
Length
440 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
GACTCTCTCTCCACCCCTAGCCG
3' ss Score
8.56
Exon sequences
Seq C1 exon
GACAGCCACTGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAAGACTACCAAGTACACTTGCCCCCCACGTTCCACACGGTGGCCTTCTATGTCATGGATGAGGATGCCCTTAG
Seq A exon
GTAAGCTCACCTGCTCTGCAGCCGGACCAGGATGTGACCATTGCTGTGACTGCTGGTCTCTCTCTGCGTCCTCTTTATAGCCTGGTGGGGATGTCCAGAGGGCCTGAGGAGAGGTGGGACTGTGCCTGTGTATTGACCTGCCGCACACAAATGTATGCATATGTGCACGCATGTGAGCACAAGTATGCATTGTGGTATGACCTATGAAGTGGGCACCCAGAGGGCATGGGTTTGGTGTGCTGAAGATCTCAAATGCAGAAGTGTGTCATGTACCATGAGAGTGTCTACAGCCTGCACAGGCATTCTGTGTTCTGCTCTATTGTGCCGTCCTGCAACTGATGGCTCCCTGGAGGATGGGGGCAGAGCTATAAGGGCTGAGCTTGCTGGGCTCTAGGCAAACTGGTTTCATAGTTCAGCTCTGACTCTCTCTCCACCCCTAG
Seq C2 exon
CCGGGACGATGTGATCGGGAAGGTCTGCCTCACGAGGGACGCGCTAGCCTCTCACCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952:ENSMUST00000042135:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
NA
C2:
PF0016825=C2=PD(11.0=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types