BtaINT0001046 @ bosTau6
Intron Retention
Description
Bos taurus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001046296]
Coordinates
chr25:2000892-2002236:+
Coord C1 exon
chr25:2000892-2001050
Coord A exon
chr25:2001051-2002172
Coord C2 exon
chr25:2002173-2002236
Length
1122 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
3' ss Seq
AGGGCGTTCTCTGCCCCCAGGTT
3' ss Score
9.84
Exon sequences
Seq C1 exon
GCAGTTTGTGCACCTGGCTGTTCATGCAGACAACTTCCACTCAGAGATCGTCGGTGTGAAGGAGATGAGAGACATCTGGTCGTGGGTCCCTGAGCGGTTCGCCCTCTGCCAGCCCCTCCTGCTCTTCTCCTCACTGCAGCATGGATACAGCCTGACCAG
Seq A exon
GTAGCGCTCTGGAGGCAGGGCCCTGGGCCTGCCCCCTCGACGTGCCAAGGTCTGGACTCCAAGGGCCAGATGGAGCAGAAGGTGTGGGGTTGCCCAGCTTCTCATCCTGCCCTCACGTCCTGGAGGTCACAGTCCAGCTGGACCCAGGCCTACGGACACGGGTACCTGGGCAAGGCCCTGCCTCTTCCTGGGGCCTAGACTTGGGAGCTCCTTTTCTGAGCATCTCTTACTCCAGGGCCACCCCCACTGCAGGAGTTAGGGTTAGAGTCACTGCAGCACACGCAGGGCTCCGGGGTCTCACACAGGCATGGTGTTGGTCAGGCGCAGACTCCTCCGCCCCCGAGCTTACAAAACTTCAGGACAACTCGAGGCGGCCGGCCTTGGATACTGCTCTTCCACCCCCATTTCACCAGTCCACACCAGGTCCATCTTGGCCCTATGGGCTGTGCTGGGCCATGGCCAGTGTCCAGGGGATTCTGGCAGGCTTCCCCCAAGGCACCCCATCTCCCTGGCGTGCTCTGCCAGGTGCTGCCCCGAGAGCCTCAGGTGGCTTCTGACCTGCGCTCTGCCTTGGGTCATAGGCAATGCAGACAGAGGGGCCCATGATGGACACTGTCAAGAGCCACCCACACATTCTGGCATAGCTAGCCAATGTGGTGTGGGAGGCCCACAGAGGGATGCTAGCCAAACCCTGGGCACCTGCGCTGGCACACCAGTGGCCTCAGGCCTCCTCCTGGCTCCCTGGTGCTGCCAGCACCCAAGAACACTCCAAGCTTTCCCAGAGCACAGACCTGTTCCTCTGGTTCTGGCTTCCCCAAAGCACTTGGCGCATGGCTATCTGCTAGGGGCCGTCTGCCCTGCCGCTTCTGCTCTGGGCATATCAGGGCAGAATGTCTAGGGCTCTGACCACTTGGCTTGCGGCCTCCTGGCTGGGGCTCCCTGTTGGCAGAAGCGCCCAAGCCCAGGTGCTGCCATCTAAGCCATGTGCCTGGTTCCTGGGAGAGGAGGACGAGCAGGTGTCAGGTCTGTCCGCCCTGGGCAGCCAGGGTCAGTAGCGGCTGGGGGGAGGGAGGCAGAGGCGGGCGCTGCTGTCAGACTGGCAAGGGCGTTCTCTGCCCCCAG
Seq C2 exon
GTTCTACTTCCAGTGCGAAGGACGAGAGCCCACTGTCCTGCTGATCAAGACTACGCAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005458:ENSBTAT00000007182:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=PU(15.1=24.1)
A:
NA
C2:
PF0753411=TLD=FE(24.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTTGTGCACCTGGCTGTT
R:
CTCCTTCTGCGTAGTCTTGATCA
Band lengths:
222-1344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]