RnoINT0148080 @ rn6
Intron Retention
Gene
ENSRNOG00000052204 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:RGD Symbol;Acc:1306143]
Coordinates
chr10:13555177-13556042:-
Coord C1 exon
chr10:13555884-13556042
Coord A exon
chr10:13555241-13555883
Coord C2 exon
chr10:13555177-13555240
Length
643 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTGTGCTCTCTGCCCCCAGGTT
3' ss Score
13.2
Exon sequences
Seq C1 exon
GCAGTTTGTACACTTGGCTGTCCATGCAGAGAACTTCCGCTCAGAGATTGTCAGTGTGAAGGAGATGAGAGACATTTGGTCCTGGATCCCTGAGCGCTTCGCCCTCTGCCAACCCCTCCTGCTCTTCTCGTCGCTGCAGCATGGGTACAGCCTAAGCAG
Seq A exon
GTGAGGGGTCCCCAACACTCTGAGAGTCACATCCTGCACTCCGCTTCCAGGAAGTCACAGGGTGGCTGGAAATTAGCCTTTGAACTGGGACCCTCGTAAGGTCCTGCCTCATCCACTGAGGCCCAAGACTCAAGAGCCTCTCTTCCTAGCTTTCTGTCATTACCAGGCCTGTTGCCTGTGGAAGTCACTGCTGTGTGTACCACAGCTCAGGGCTCTGTAGGCGTCGTGAAGGGGCTCTGTCTGTGTAAGCCCCTGGTGTGCTAATAGGGACACACTGCCCTCCATGGTAGCTCAGTCAAATCTCAAATGACAGTTCACAAACTCTTGACCACCCTCCCCCAACCTGAAGGCCCCGCCTACGTCCACACAAGCATTTGGCTTGACTGAGTTCTGTCCTCCTGCCCCTGGGAATGCCTGAGCACCACAGTGGCAAGCCTCACCTCCCTCACACATCCATGGTTGAGCTTTCCTGTCTCTCTGCCTCCTGCTTCTAGCACTTAGCTCTCTGGAGGGGAGTCACACTGTGTGCACTGAGGTGGCTGGAAAGGAGCTTAGCCCCCAGGCCTCTCTACCCTAGAGACTGATGGTTGGGAGGTCAGGGAAGGCGTGTAGAGGCGGTAGCTTGTGTGCTCTCTGCCCCCAG
Seq C2 exon
GTTCTATTTCCAGTGCGAAGGACATGAGCCCACACTCCTGCTCATCAAGACCACTCAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052204:ENSRNOT00000081995:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=PU(6.8=24.1)
A:
NA
C2:
PF0753411=TLD=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTTGTACACTTGGCTGT
R:
TCCTTTTGAGTGGTCTTGATGAGC
Band lengths:
222-865
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]