GgaINT0012582 @ galGal3
Intron Retention
Gene
ENSGALG00000009217 | TBC1D24
Description
NA
Coordinates
chr14:14681119-14682275:-
Coord C1 exon
chr14:14682117-14682275
Coord A exon
chr14:14681183-14682116
Coord C2 exon
chr14:14681119-14681182
Length
934 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TTGTGTGCTTTGCACTGCAGGTT
3' ss Score
9.43
Exon sequences
Seq C1 exon
GCAGAATGTGCACTTGGCAGTCCACGCAGAGAACTTCAAGTCTGAAATTGTCAGTGTGAAAGAGATGCGAGATATCTGGTCGTGGATCCCAGAGCGCTTTGCACTTTGCCAGCCCCTCTTGCTCTTCACCACCTTGGAACACGGCTGCAGTCTGAGCAG
Seq A exon
GTAATGACAGCTTTCCCTGCACCTCCTGAGGGCAAAAAAGAGCAATGAATGAGCTGCTGACTGGATGGGCACAGTCAAGTTGTCTGAAAAGCAGTCAGTGATGGAACATAACTGTGGCAAATTCCTCTTGGCTTCAGCATTTGACCGGGACGTTTCATTTGCCAGAACGTGGAGAACCATTTTAATATGTCCACAACCGATTGGAAAAGTCAAACATACATCAGTTCAGAACGTACTGCACTGGGACTGGTTCATTCTCCACTGGTTATACATGATTTAAATTGGTGGCTGCTCTTCAGGCTCTTTTGAGGGATTAGTTTGAATGTGATCATCCAAAGGGAAGTGAGGGAAGTGAAAACTGGTGGTTCCCTTACAGTTTCTCTCTGTCTGTGATTCTGATTGTTATTACTACAGTGGGATAAAATAGACATGAGTTTTACTTGTTCTTGACACACAAGGCTATAATCATATAGCTCCTAATAATTACTTCCACTCTGAAATTGAGATAGTGAGCTGTCCCAGTGCCATGTGTCCATGAGGAAAAGTAAAAGCAAGCAAAGAGAATGCATCATAATTACTTGGTATGAAGACGCACAGCTCTGAAGCAGAGATACAGTCATCAGCCCTCAGGATGCAACTTACTTTCCATTGCCTGATGTAAAATGCTGCTGTTGGCATAGCTGGGCTTATTCTGAGGGAGCACAAACAGCTCTGCAAAAAGCTGCCTAGAAGAGAGCTGCTTCATAGCGTGTTTGCACTCATCTGTGTTATTTGTGATGGGTGGTAGAAAGCATTCAGCATATTCTTAAGCCTCAGATGGGTTTTTTGCCATGCCATCAGCTGAAGGAGGAGGTGGTGCCTAAAGTGAAGGTGGAAATGTGCTGCAGTGGGTGATGGTTGTTGAGTGCTTATTTTTGTGTGCTTTGCACTGCAG
Seq C2 exon
GTTCTATTCTCACAGTGAGGGACATGAGCCTACTCTTCTTCTCATCAAGACCACAGCAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217:ENSGALT00000015002:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=PU(12.0=24.1)
A:
NA
C2:
PF0753411=TLD=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTGGCAGTCCACGC
R:
CTCTTTTGCTGTGGTCTTGATGA
Band lengths:
214-1148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]