BtaINT0001048 @ bosTau6
Intron Retention
Description
Bos taurus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001046296]
Coordinates
chr25:2003140-2003697:+
Coord C1 exon
chr25:2003140-2003235
Coord A exon
chr25:2003236-2003474
Coord C2 exon
chr25:2003475-2003697
Length
239 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ACACCGGCCTTTGTCCTCAGCTG
3' ss Score
8.42
Exon sequences
Seq C1 exon
GTGTGTGGCGCCTACCTGTCAACAGACTGGAGTGAGAGAAACAAGTTTGGGGGCAAGCTGGGCTTCTTCGGGACTGGAGAGTGCTTCGTGTTTAGG
Seq A exon
GTGAGTGGGCCCCCTGTGGGAGGTCACCCCCTCACGTGACCCTGCTTACTTCCAGACGCGCCTCCGTCACCTGCTGGGTGTGACCCTTAGAGATGAGCTCCGAGAGCAGGCAGCCGTCTGCGGCACGGTGTGCGCTGGCTCCTGCCCCTAGCTCGGGTCCTCGCACTGGGCACGGACGACGAGCCCTGGGGGCGAGCGGGCGCCGCGGGTCAAGTCCTCACACCGGCCTTTGTCCTCAG
Seq C2 exon
CTGCAGCCCGAGGTCCAGCGCTACGAGTGGGTGGTCATCAAACACCCAGAGCTGACCAAGCCCGCGCCCCTGGAGCCCACCACCGTTCCGCCCTCCCCCAGCCACTCTGTGTCCTCTGAGCCCGCAGACCGCCTCTCGCCGTTCCTGGCTACTCGGCACTTCAATCTGCCCTCCAAGACGGAGTCCCTGTTCATGGCAGGGGGCAGCGACTGCCTCATCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005458:ENSBTAT00000007182:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.227
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(36.0=100)
A:
NA
C2:
PF0753411=TLD=PD(20.9=24.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTACCTGTCAACAGACTG
R:
GCCCCCTGCCATGAACAG
Band lengths:
292-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]