GgaINT0012584 @ galGal3
Intron Retention
Gene
ENSGALG00000009217 | TBC1D24
Description
NA
Coordinates
chr14:14678458-14679219:-
Coord C1 exon
chr14:14679124-14679219
Coord A exon
chr14:14678693-14679123
Coord C2 exon
chr14:14678458-14678692
Length
431 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTTCCTCCTCACCTGCATAGCTG
3' ss Score
7.89
Exon sequences
Seq C1 exon
GTCTGCGGTGCTTATCTGTCCACCGACTGGAGCGAGCGCAGGAGAGGTGGGAACAAGCTGAGTTTCTTTGGAACTGGGGAGTGCTTTGTGTTCAGG
Seq A exon
GTGAGTATGGTTTCCTTCTTCCTGCCCTGCAGTGAGGTGTGTGCTGTACTGGCGGGACTCACTCACGCTTCCCTTCCTAGGGAAGAGGCTGGATTAATGTACTTGTAGTTCTTAAAGCCTGCTGAGCGCTCCGGATTGGGCAGAGGAAGCATTGCTTTTCAGTTCTGTGCTGAGCCTTTTTTGCCCGATGCTCAGAGTTCTTTAAGTTCTATTAAAGCGACTGGGAACCGCTGCGTTGTCTTTTCAATGGCTTAAAAAGCAAAGGTATAAAGAAAAGAAACAATATCCGACCTAAACAACGGTTTGGTCCAATCTTCACCCTTAATGGTGTGGGTGGAAGCTTGAGGGGCTCAAGTGTTGTTTTCTCTGCAGAGCTCTCAGCACTGTTATTGTTCACTGATGAAGTTCTGTTTTCCTCCTCACCTGCATAG
Seq C2 exon
CTGCAACCAGAAGTGGAACGCTACGAGTGGGTGATCATAAAGCACCCAGAATTGGCTGCAAGTGGTTCTGAGCCAGAAAATCATGCCTCGCCAGCTTCCAACGCCCTCTCCTTCAGAAGCACCCCCTCAGACCCATCAGATCGCCTTTCTCCCTTCTTATCAGCTCGGCACTTCAACTTACCGTCCAAAACAGCTTCCATGTTCATGGCTGGCAGCAGTGAATGCATCATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217:ENSGALT00000015002:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.228
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(28.7=100)
A:
NA
C2:
PF0753411=TLD=PD(37.0=50.6),PF0753411=TLD=PU(43.9=45.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCGGTGCTTATCTGTCC
R:
ATTCACTGCTGCCAGCCATG
Band lengths:
319-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]