DreINT0160699 @ danRer10
Intron Retention
Gene
ENSDARG00000069339 | tbc1d24
Description
TBC1 domain family, member 24 [Source:ZFIN;Acc:ZDB-GENE-050809-65]
Coordinates
chr24:39252499-39255992:+
Coord C1 exon
chr24:39252499-39252594
Coord A exon
chr24:39252595-39255745
Coord C2 exon
chr24:39255746-39255992
Length
3151 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
TGTTTGTGTTTGTGTTTCAGATG
3' ss Score
12.07
Exon sequences
Seq C1 exon
GTCTGCGGAGCCTTCCTGTCCACTGATTGGGAAGAGAGAAAAAGGGGCGGGAACAAGCTGAGCTTCTTTGGCACTGGAGAGTGTTTTGTTTTCAGG
Seq A exon
GTATGTCACATTGCACATTTATTTTAATTGTTAATATTTAATAATATGGATTGTATAATATCTACTTGACATCTGTGGTTTGCAGTATACTGAGATTATTATATAAATGATCCACTAGGTGACGCTGTTTTTATGCTGTTAGACTTAAATGCAGTGCATAAGCTTCAAGTAACTCTCATCCATCATCATCATTTCATTCTGTAAAGCTCTCAGAGGAATATTTTAAAGCTCTTTGGTGAACTTGAGACTTAATGGAGTTCTTGGTTACATTTCTTCAAATATGAATTTGTTCTAGAATTTCTGTGTAGAAATAACAAGGACACAAATTCCTTTATTCATTCGTTTTCCTTTGGCTTATTCCCTTATTCATCTGGGGTTGCCACAGTGAAATGCACCGCCGACTTATCCAGCGTATGTTTTAGGCAGCGGATGCCCCTCCAGCTGCAACCCATCACTGGGAAACACCCATACACTCATTCACACACACACATATACTACGGGACAATTTAGCCTACCCAATTGTCCACATGTCTTTGAACTTGTGGGGGAAACCGGAGCATTCGGACATGGGGAGAACATGCAAACTCCACATAGAAATGCCAACTGAACCAGCCGAGGCTTGAACCAGTGACCTTCTTGCTGTGAGGCGATCGTGCTACACACTGAGCCACTGTGTTTTTATTTAGCAGACCAAAAACAACAACCATGAACAGCATAAATGCACATTGTTTGTGTTTCTAGGCTCTCCAAGCTTTAACCACAACAGGTTCAGATTTCACTTTTACTCTGAGTAACCGCTGAACCACTCTGCAGATTAGTGTTTTCACAAGTCAGGCGGTAATGAAAGGATCAGTTCACTTCCAGGTAAATACTAAGATCTGGTCATTACTTAGTCATACAAGATGTCAATTTTTTTTTCTTCGGTTTAGAATAAACGTTTTGCATTGTTATTGTTTATAAAAAAATAATTTAACTAAAACATTACCATCCCCTAAGACAGAGGTGGGCAAACTACAGCCCACGGGCCATATGCGGCCCGCTAAACACTTTCATCCGGCTGGCGAGGGAGTTTTTAAAATGCTGCTTCTGAGTAACGGTTTAGATTTAAAATTAGTAAATTTATAATGCAATACAAGTGAACGCCATATGATGGCAGTATTTCACGCTGTACAGTTAGTGCAACCAGTAGAAATAGAACATACTCTAGCATATTAAAATGCACTCGACTGTTAATGACTAAGAGTCAGACAGGCAAAAAAAGAAAAATTGACTCTGAATTTTGCGTGTTTAAGGAATAATGGACAACAAAATACTTCTTCACCAATATCGGACAGAAAGCGGGCTGCCTAATATGCCTAGAAAGTGTTGCTGTTTTTAAAGACTACAACCTAAGTCTACATTTTTTACGCAAATATTCAAATTATTTTTGATGTGTTAATATGAGATTTCTTCTATTAGACAATATCTTTTCTAATCTCCACTGTAAAAATTAATATATTATTATTATTATTATTATTATTATATTAAGTTTTTTTTTAATGATGATTGATAATTAAATATAAATAGCAAATTAATTTCACTTGTAAATATGACTCAATAACAACTATTTAAAAAATGTGTGTTAATGTGACACGTTTATGTCTGATATTACATGTTTCGTGCACACTGCCACTATAAATAAAAGTTATTTTTTGAAGGATTTGACATGGCCCTTAACGTGTTTTGGAAAACTTGATGTGGCCCTCGGGTCTAAAAAGTTTGCCCACCGCTGCCCTAAGATGATTAATAAATGGTTTTGTGGTTGTCATTACATTGACTTGTTTTAAATTAACAGATGTTAAATGGTGCCTTACTGTACAGAATTAACAAACAAAAAACGTATGAATAGTTACAGAATTTTCATTGTTGTAGAACAGATTAATAAGTCAAATTGTTCATGTTTAAAAGTAAATCACAAAGTTTTCAAGAATTTGGTGCTGATAAACACCCACTGCTAGTACAATCTGAATATTCTTCAAAAGCAGTCTACAAGTTTTAATAATAAATAATTATTTACTGTTTTAAAGTGCCCCTGAAATCAACATTGTGCATCAGAATGTTCATTCATTTACTAAATGAATTATTCGGCTTATAAGTCTCTTATTTATCAGGGGTCACCACAGCGGAATGAACTGCCAACTTATCCAGCATATGTTTTACACAGCGGATGCCCTTCCAGCCGCAAACAGTACTGGGAAACTCCCATACACACTCACATTCACACACTATAGCCAATTTAGTTTATTCATAACGCATGTGTTTGGACTGAGGGAGAAACACCTAGAGGAAACCCACGCTAACACGGGGAGAACATTCAAACTCCACACAAAATGCCAACTGACCCAGCCGGGACTCAAACCAGTGACCTTATTGCTGTGATGCGACAGTGCTAACCACTGCGCCACCTTTCATCAGGACATTCATTCATTTTCTTTTTTCTTCTTCAACTTATCTAGCATATGTTTTACGCAGCGGATGCCCTTCCAGCTGTAACCCATTACTGGAAAACACCCACACACGCTCATTCACACACATACACTATAGACAATTTAGCTTACCCAATTTCCCTATAGCGCATGTGTTTGGACAATGGGAAGCACTCAGAGGAAACCCACGGCAACACTGGGAGAACATGCAAACTCCACACAGAAATGCCAACTGACCCAGTAAATAGTCAGGAAATGTTCATTCTCGAGCGGAACTCATCCTTTAAATCGGTGTGTGTGTGTGTGTGTGTGTGTTATTTAAAGATTTGCAATGATAAAACAGTGTCTCATGCCGTTATATACATTAATGCAGCAATCTATTACACAGTCATCCTTCAGACAGTAATTCAAGTCTTTCGTGAAGGGTTTTGTGAAGGTGCTTCCAGTATACATTCTCCAAAATCTCCTATAGAGGATTCCAGATCTGCCAGAAATCATCAGATATACTGGATAAGTACAAAGGTGTAACACAGATTCTAGTCCACGACTAAGGTGTAGACCCGTTTTACAGATCAGTAGCTAAAAAACTGGAGATGAGGCAAAAGGTTTACCAATAATCTGCTGAAATAATTTGTGGATTTGTGTTTGTGTGTGTGTGTGTGTGTGTGTTTGTGTTTGTGTTTCAG
Seq C2 exon
ATGAAGCCAGAGATGGAGCGTTACGAGTGGGTCATTATCAAACACCCAGAGCTGGCCAAATCAGCTCAGTCCGCAGAGGATCAGAGCAGCGTGGAGGACAACGGGACGCCGCACTCTGGAGAAACTCTGGAGAAACCCACCACTGACTCGTCTCACCTCTCACCGTTCCTGTCCGCTCGACACTTCAACCTCAACTCCAGAAACACGTCCATGTTCATGGCTGGAAACGTCGACTCCATCATTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069339:ENSDART00000155346:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.349
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(33.7=100)
A:
NA
C2:
PF0753411=TLD=PD(26.1=28.9),PF0753411=TLD=PU(42.5=41.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]