BtaINT0001315 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E583]
Coordinates
chr7:45529178-45529515:-
Coord C1 exon
chr7:45529323-45529515
Coord A exon
chr7:45529250-45529322
Coord C2 exon
chr7:45529178-45529249
Length
73 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGACCGCACTGCCCCTGCAGAGC
3' ss Score
8.9
Exon sequences
Seq C1 exon
CAGGTCCTCCTGCAGGAGCCCAACCCAGGCATTGAATTCGAGTTCTGGCTCCCTCGGGAGCGCTATGGCCCCTTCCAGGCGCAGGCTCAGGTCTTGGGCTGGTCCCCGCGGCAGCCTCAGCCTCGAGAGGTAGAACCTCAGCCCCTTGAGTCCCCCACTGTCATCCCTCCACGGACCCCGATACCCACTCCAG
Seq A exon
GTGAGCTGGGGACAGCCTGGGTGGGGGGCCAGCAGGGGCAAGGCCCGCACCCCTGACCGCACTGCCCCTGCAG
Seq C2 exon
AGCCCTGTCCACCCTGCCCTGACACCCGCGGTCGTGCCCACCGGTTACTCCACTATTGCGGCAGTGACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006662:ENSBTAT00000008750:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=NA C2=0.320
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175916=NTR=PU(7.7=32.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGTCTTGGGCTGGTCC
R:
CGAAGTCACTGCCGCAATAGT
Band lengths:
180-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]