GgaINT0145659 @ galGal4
Intron Retention
Gene
ENSGALG00000024298 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr28:3129212-3129657:-
Coord C1 exon
chr28:3129475-3129657
Coord A exon
chr28:3129284-3129474
Coord C2 exon
chr28:3129212-3129283
Length
191 bp
Sequences
Splice sites
5' ss Seq
CCAGGGCCC
5' ss Score
-14.43
3' ss Seq
CCCAGCCTTCGTCCCCGCAGGGC
3' ss Score
11.14
Exon sequences
Seq C1 exon
CTCTGCCCCTGGATGCACAGGTGCTGCTGCAGGAGCCCAACCCAGGCATTGAGTACGAGTTCTGGCTGCCCCGCGGGCACCCCCAGCACAGCATGGTGGACACCAGCGCCCTGCGGCAGCCCCAACCCCGTGGAGCTGGCAGCCCCCCGCCCGCTGAGCCCCCACTCCCCACGGTGCCCCCCA
Seq A exon
GGGCCCGGGACCCCATCACAGAGCCATTGCCACCACGAAGCCCCCCTGGGGTCAGATCTGCTGCAGGTGACCTCCCACATCCTCCCACACCCCCGGGCTGTGCTGGAGTCCAGAAGTGCCCCCCTTCTCCTTAAGGGATGTGGTCCCATGGGGGGGTTTTGGGTGCCACATCCCAGCCTTCGTCCCCGCAG
Seq C2 exon
GGCGATGCGGGCGGTGCCACCCACCCAAGGGGCGCTCTCAGCGCATCCGGCACTTCTGCCAGAGTGACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298:ENSGALT00000041053:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=NA C2=0.360
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(20.7=37.1)
A:
NA
C2:
PF0175916=NTR=PU(7.7=32.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCCCTGGATGCACAG
R:
CGAAGTCACTCTGGCAGAAGT
Band lengths:
255-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]