BtaINT0002246 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99500778-99501332:+
Coord C1 exon
chr11:99500778-99500923
Coord A exon
chr11:99500924-99501150
Coord C2 exon
chr11:99501151-99501332
Length
227 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
CCCTCCTGTGTCCTTTGCAGTGA
3' ss Score
11.2
Exon sequences
Seq C1 exon
AGAGTTAGGGTCTGTGGATGACATCCTTGGGCCCCTGACGGAGATCCTGGAGGGAGTGCTGCAGGCAGACCAGCAGCTTATGGAGAAGACCAAGGCCAAGGTGTTCTCGGCGTTCATCACGGTGCTGCAGATGAAGGAGATGAGCG
Seq A exon
GTAAGGGGCAGGGAGGGGTGAGGGGCAAGCCTTCCTCCACATCAGAGCTGGGATTGTTCTCTGAAGCTCGAGTTTTCAGTCCTGGGCTCTTGTCTTCAGGAAAGCTCTTTGTCTCCTCCCCTCCCACTGGCTGACGCACTTCCTCTTAGCACCCTGCGCTCGCAGCCACCTGCCTGGAACAGACGTGTTGGGTAGCCTGACAGAGTCCCCTCCTGTGTCCTTTGCAG
Seq C2 exon
TGAATGACATCCCCCAGTACTCCCAGCTGGTGCTGAACGTCTGTGAGACCCTTCAGGAAGAGGTGATCGCACTTTTCGACCACACCCGCCACAGCCTGGCGGCGGGCAGTGCCACCGAGGACAAGGACAGCATGGAGACCGACGACTGCTCCCGGCTCCGGCACAGGGACCAGCGGGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTAGGGTCTGTGGATGACA
R:
GAGCAGTCGTCGGTCTCCAT
Band lengths:
297-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development