BtaINT0002251 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99503517-99504360:+
Coord C1 exon
chr11:99503517-99503654
Coord A exon
chr11:99503655-99504285
Coord C2 exon
chr11:99504286-99504360
Length
631 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CACCCTCTCCTGTGCCACAGGTG
3' ss Score
10.78
Exon sequences
Seq C1 exon
TGCCTCAACGCCGTGAGGACGGTGCAGAGTCTGGCGTGCCTGGAGGAGGCCGACCATACCGTGGGCTTCCTCCTACAGCTCTCCAGCTTCAGGAAGGAGTGGCACTTCCACCTGCCTCAGCTCATGCGGGATGTCCAG
Seq A exon
GTGCGGCCCGAGACCAGCTTTTTGGAGGGTCTGGGGAAAGGTTCAGGGAGAACGGGGCAGGGCGTGAAGGGCAGGCCTGTTCCTGGAACGTGGCCGTTTCTTTGGTAGCACAGGTTTGGGTTCACCTTGCTTCCTCCACAGCGAAGGGTTGCTTCCATAGCATAGGGCAGCCTTACAGGGTGAGAACCTGGGCTCTGGCGTAGACCCTGGCTCACATCCCTTAGTGCAGGACATTTATGAAATGGGGCCAGCTGGAGGAGCAGGCGGGGAGGAGCACAGGCTCCAGAGTCAGGCTGTGCTTGTGTGACCTTGGCCAGGTCACTTCCCTTCTCTCCTTCATCTCACCGTTTTCTTTTTCTATAAGACGGGAAAACTGTCCCCTTCTAACCTATTTACTTAGGACTTTATACCGTGCCTGGTTTCTAGCTGGGTCTCGGAAACCATCCAGGCATCTGTTGACCCAAGAGTCTGGTTGAGCGTGCTTGGTGGCTGTGAGGTTTGGGGCTGGAGGTCACAGGGAGTTGTGGGGGACACGGGAGAAGTGCGTGGTTTCCAGTAGCACCCCGCTGGGTGCGTCTGGTCAGCTGCCTGGGGCCACCCTGTGGATCCCTCACCCTCTCCTGTGCCACAG
Seq C2 exon
GTGAACCTCGGCTACCTGTGCCAGGCCTGCACCTCCCTCCTGCACAGCCGCAAGATGCTGCAGCACTACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACGGTGCAGAGTCTG
R:
GCATCTTGCGGCTGTGCA
Band lengths:
183-814
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development