BtaINT0002256 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99505156-99505490:+
Coord C1 exon
chr11:99505156-99505229
Coord A exon
chr11:99505230-99505360
Coord C2 exon
chr11:99505361-99505490
Length
131 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGA
5' ss Score
3.22
3' ss Seq
CACATCCGCCTCCCCTCCAGGTC
3' ss Score
9.89
Exon sequences
Seq C1 exon
CTGGACAAGAAAAAGGAGCCTCTCACCCAGGCTGTGGGGCTCAGCACACAAGCAGAAGGGACCAGAACTCTGAA
Seq A exon
GTGAGAAAGCCCTCCTTCTGGACCTTGGTTGGGGGCTAGGGTGGTCTTGGGCTGGCTCTCCTGGATCCGCCGCTTCATGCATACAGCCCACATGGCCTCTGCAGCAGTGCCCACATCCGCCTCCCCTCCAG
Seq C2 exon
GTCGCTCCTGATGTTCACCATGGAGAACTGCTTCTACCTGCTCATCTCCCAGGCGATGCGTTACCTTCGGGACCCGGCTGTGCACCCCCGGGACAAGCAGCGGATGAAGCAGGAGCTCAGCTCAGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=NA C2=0.295
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACAAGAAAAAGGAGCCTCT
R:
CTGCTTCATCCGCTGCTTGTC
Band lengths:
186-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development