GgaINT0126065 @ galGal3
Intron Retention
Gene
ENSGALG00000004548 | NUP188
Description
NA
Coordinates
chr17:5984790-5985317:+
Coord C1 exon
chr17:5984790-5984860
Coord A exon
chr17:5984861-5985187
Coord C2 exon
chr17:5985188-5985317
Length
327 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
ATCTGCATTTCTTTGCACAGGTC
3' ss Score
9
Exon sequences
Seq C1 exon
TTGGATAAGAAGAAGGAACCTTTTCCTCAGGCTGCAGGGCTGAATATGCAAGAGGGAACCAAAACCCTCAA
Seq A exon
GTAAGTTTCTAGATCTTTTATTTAGCTGTGGCCAATTGCAGAACCCAGTGCTCCTCAGGTCAGAACTGAGATTTATAGGTATTAGGGTAGCTTCAGAACTTCTCACTCTGAACGACAAGAGTTCAGCTGCCTGTTAGAAGCTCTCCAAAGCATGCAGGGCAAGTGGGGGCTTCTGCCCTGTAGACAATAGCTTTTGTTGTCGTTGCCTGAGCCCAGTCTGAGCAGCAGCAGTGGTCCCTCCTATGTACTCTAGATGAAGTCCTTCTTAGGCTGTGTGATCTGAAACTGGGATATTCGGCTCCTGCTGATCTGCATTTCTTTGCACAG
Seq C2 exon
GTCTCTGCTCATGTTTACAATGGAAAACTGTTTCTACCTGCTCATCTCCCAGGCCGTGCGGTACTTGAGAGACCCAGCTGTGCATCCTCGCGATAAGCAGCGGATGAAACAGGAGCTCAGCTCTGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548:ENSGALT00000039668:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGATAAGAAGAAGGAACCTTTTC
R:
CTGAGCTCCTGTTTCATCCGC
Band lengths:
191-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]