BtaINT0002841 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BEQ4]
Coordinates
chr21:35169595-35170329:+
Coord C1 exon
chr21:35169595-35169742
Coord A exon
chr21:35169743-35170175
Coord C2 exon
chr21:35170176-35170329
Length
433 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GGCTCAAACCTTACCTCTAGGTT
3' ss Score
7.77
Exon sequences
Seq C1 exon
GGCAGATCATCGGAGGCCGAGAAGCCAGGCCCCATTCCCGCCCCTACATGGCATATATTCAGATCCGAAGTCCAGTAGGTATCAAAGTTTGTGGGGGGTTCCTGGTGCGTGAAGATTTTGTGATGACAGCAGCTCACTGCTTGGGAAG
Seq A exon
GTGAGAACTTAAGGGACTTCTGGGCACCAGCAAAGCAGGTCCAGAAGAGTTCACGAGAGAAGTCACCAAAAGCAGGGTTCTAGCTTGAATGGGTGAAAAAAAAAGACCATGTAGAGATTGGAGTACAAGAAGCAGGCCAGTGTGAATGGGGGAGGACCTGATCAAAAAGAACAAGACGGGGAGATGAAATGTATGCACTGGGGCTTAACTTATGACTTCAATGTATTTTTGCAGTCTCTTGTTGGGGAGGCAAAATTCGAAATCACTATGTCCTCCACCACCTCCAGCTCAAGGCTGGGGAGACCTAGGGTGCAAAGTTCGGCCCCAGAGCCCTTCTGTTTCTGAGTTCCCTCGGTTGAGGTCTGGCAACCCTGGGTAGCCACTTGACTTCTACTGTGGACCACAGTTCCTGTGGCTCAAACCTTACCTCTAG
Seq C2 exon
GTTCTCTTTCCTTTGCAGCCAAATAAATGTCATCCTGGGGGCCCACAACATCAGGACATTGGAAAGCACCCAGCAGCGCATCCCTGTGCTCAGATCCATCCCCCACCCTGGATACAGTCAGCAGAACAAGAGGAATGACATCATGTTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013234:ENSBTAT00000017607:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.0=94.0)
A:
NA
C2:
PF0008921=Trypsin=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGATCATCGGAGGCC
R:
CTGCAGTAACATGATGTCATTCCT
Band lengths:
302-735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]