GgaINT0000084 @ galGal3
Intron Retention
Description
NA
Coordinates
chr28_random:92043-92474:+
Coord C1 exon
chr28_random:92043-92190
Coord A exon
chr28_random:92191-92338
Coord C2 exon
chr28_random:92339-92474
Length
148 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CCCCTGTATGCCACGGTCAGAAA
3' ss Score
1.61
Exon sequences
Seq C1 exon
GTGCTCTGCGGGGTCAGATCATCGGGGGCCACGAGGCCAAGCCCCACTCCCACCCCTACATGGCGTACCTGAAGTTGAGGATGTCTGCCTGCGGAGGATTCCTGGTGGCCCCTGATTGGGTGATGACGGCCGCACACTGCTTGGGGGG
Seq A exon
GTGAGTACTGCACACAGGAGCTTCGTTCTCCTCTTCCTCCCCATCACTGGGGTCGTTTTGGAGCAGCTCTCCCCACCTTTCTGCAAAAGGGGCAGGGAGGCGGGGTGAGACCCAGCTGGTTCTCCTCTCCCCTGTATGCCACGGTCAG
Seq C2 exon
AAACATCACCGTCATCCTGGGGGCTCACGATATCTACGAACCAGAGCAGAGCCAGCAGGTCCGAGGGGTCCTCAAATACTACCCACACCCCGCGTACGACCCCAACACCATGGCCAACGACATCATGCTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013378:ENSGALT00000021823:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.4=86.0)
A:
NA
C2:
PF0008921=Trypsin=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCGGGGTCAGATCATCG
R:
CATGGTGTTGGGGTCGTACG
Band lengths:
257-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]