RnoINT0043337 @ rn6
Intron Retention
Gene
ENSRNOG00000020647 | Ctsg
Description
cathepsin G [Source:RGD Symbol;Acc:1307681]
Coordinates
chr15:35112191-35112868:-
Coord C1 exon
chr15:35112721-35112868
Coord A exon
chr15:35112330-35112720
Coord C2 exon
chr15:35112191-35112329
Length
391 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GACTGATCTTTCTTTCGCAGCTC
3' ss Score
9.07
Exon sequences
Seq C1 exon
GAAAGATCATTGGAGGCCGAGAAGCCAGGCCAAATTCCCACCCCTACATGGCATTTCTTCTGATCCAGAGTCCAGAAGGGCTGAGTGCTTGTGGAGGGTTTCTGGTGCGAGAAGACTTTGTCCTCACAGCAGGTCACTGCTTTGGAAG
Seq A exon
GTGAGGAACTCAGGAGTTTCCCAGGAAGTCCTCAAACTCCCTCTGCAGAGCTGAAAATATGCAATTACAATTAAGGATAATGATAATGAATTCTGGAGACAGGATGAGACCAGGAGGAGGGAGGCAAGAAGCAAGTGTCCATGCAAGAAAAGGAGGCTCTGATCAGGCTGGGCGCTGTGAACCCAAACTGTTTCTGTTTGTTCTGCTTTCCCCAGTTCAGGGTTTCCCCAGGTGGGAAACAGCAGGCAGGGCTCAGACCCAGGGCCCTCCCATGCCTCCCACTCTCTCCCGATTGTTTGCCTGCCCCTGAACCATTGGTCTGCCCTGCTGAACTGCTGGATCTAAGATCCTGGTTAACGTATCTACCTCTAGACTGATCTTTCTTTCGCAG
Seq C2 exon
CTCCATAAATGTTACCCTAGGGGCCCACAACATTCGAAGGCAAGAAGGGACCCAGCAACACATCACTGTTCTCAGAGCCATCCGCCATCCTGATTACAATCCCCCGCCAGTCATCCAGAATGACATCATGCTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020647:ENSRNOT00000059677:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.5=94.0)
A:
NA
C2:
PF0008921=Trypsin=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATTGGAGGCCGAGAAGC
R:
GCAGTAGCATGATGTCATTCTGGA
Band lengths:
281-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]