BtaINT0008268 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BAD2]
Coordinates
chr21:35185199-35186203:-
Coord C1 exon
chr21:35186056-35186203
Coord A exon
chr21:35185335-35186055
Coord C2 exon
chr21:35185199-35185334
Length
721 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AGGCTCCCTTTCCTTTGCAGCCA
3' ss Score
9.39
Exon sequences
Seq C1 exon
GGCAGATCATCGGAGGCCGAGAGGCCAGGCCCCATTCCCACCCCTACATGGCATATATTCAGACCCTGACACCAGCAGGTCCGACCATTTGTGGGGGGTTCCTGGTACGTGAAGACTTCGTGATGACAGCAGCTCGCTGCTTGGGAAG
Seq A exon
GTGAGAAATTAAAGAGCTTCTGCTGCTGCTGCTGCTGCTAAATCGCTTCAGTCGTGTCCAACTCTGTGCGACCCCACAGACAGCAGCCCACCAGGCTACCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGAGTGAAAGTGAAAAGTGAAAGGGAAGTCGACTTGCTCAGTTGTGCCTGACTCTTAGCCACCCCATGGACTGCAGCCTACCGGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGTAAAGAGCTTCTAGGCACCTGCAAAGCAGATCCAGAAGAGTTCATGAGAGGAGCCATTGAAGGCAGGTTTCTAGCAATGAATAGGTGAAAAAAGACCAAGAGAAGGCCTGTGTGAATGGATAGAAAGGAGGGTCTGATCAGAAAGATTAAGAGGGGAGCCCCACACCATGGGGCTCAAATTGTGAATTCAAGCTCTTTTTCAACTTCTTGTAGGGGAGGCAAAATTTAAGTTTATTGAATTTCCCACCACCCCCCATCTCAAGGGGAGGCCTAAGGCACAGAGTTCAGCCCCAGAGCCCTCCTGTCCCTTGGTTCCCTTGGCTGAGGTCTCGCTACCCTGGGCAGTCACTCGACCTGTATCGGGGACTGCAGTTCCTGAAGCTCAAACCTACCTCTAGGCTCCCTTTCCTTTGCAG
Seq C2 exon
CCAAATAAATGTCATCTTGGGGATCCACAGTGTCACCGCTTCTGAATGGACGCAGCAGCGCATCCCTGTTCTCAGACCCATCCCCCACCCCAGATACAATCAGCGGAACAACCAGAACGACATCATGTTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040134:ENSBTAT00000054741:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.6=94.0)
A:
NA
C2:
PF0008921=Trypsin=FE(20.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGATCATCGGAGGCC
R:
GCAGTAACATGATGTCGTTCTGG
Band lengths:
282-1003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]