BtaINT0003265 @ bosTau6
Intron Retention
Description
Bos taurus argininosuccinate lyase (ASL), mRNA. [Source:RefSeq mRNA;Acc:NM_001034428]
Coordinates
chr25:28248494-28249479:-
Coord C1 exon
chr25:28249396-28249479
Coord A exon
chr25:28248575-28249395
Coord C2 exon
chr25:28248494-28248574
Length
821 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
3' ss Seq
GCCTGGCCTGCTGTCCCCAGATT
3' ss Score
9.09
Exon sequences
Seq C1 exon
GAAGACAAGGAAGCCGTGTTTGAAGTGTCCGACACCATGAGCGCTGTCCTCCAAGTGGCCACTGGTGTCATCTCTACCCTGCAG
Seq A exon
GCAAGACACACCTCTTCTCCCCGAGGCTCTCAAACTTGGGGGTGGTGTGCCAGGAGGGTGATCTTGAAAGGAGACAGGTGTGGGTGGGTCCGGAAGACCTGGGGCAGAGGGAGGGGGTATGTGCTTGGTCCTGCCCTGGGAACAGTGAAGAGACACAGTTAAGCTGCTGCAGGAGAATGGAAGTGGGTTAGATCCAAGGAGCCCCCTCAACTGGCCTGACCAGATTTCTTTTTTAAACGCTTACTGTGGGAGAATTCAATATACAACAGTGGAGAGGATGTATGATGACCCCTGGGCTTCCCCAGTGGCACAGTGGTAAAAGAATCCGCCTGCCAATGCAGGAGACCTGGCTCCGATCCCTGGGTTGGGAAGATCCCCTGGAGGAGGAAATGGCAACCTGCTCCAGTATTCTTGCCTGGGAAATCCCATGGACAGAGGAGCCTCTAAAGTAGTGGTTCTCAAAGTGTGGTCCCGGGATCAGCAGTATCAGCATCACCTGAGAACTTGACAGACCTGCAATCCTAGGCCCCCCTGCAGACCCACTGAATCACAGGCTCTGGGATAGGCCACACGATCTATAGTCTAATCAACCCTGCAGGTGGTTCTGATGCATTCTAAAGATCAGGAGGCAGCCCTGGTAACACCGCTAACACTTGTCAATAGTTGGGAAATGGTAGCTCAAGCAGAAAGCAGGACAGGGTGGGTGAGAGGGGGTGTGTCCAAGGCAGGGGACATCCTGACTGAGCGGGGTGGGTCTGGGGCGGGCAGCTCCAGGACCCAGGGCCCCTGGATTCACTGCTGGCCTGGCCTGCTGTCCCCAG
Seq C2 exon
ATTCACCGTGAGAACATGGGACGGGCTCTGAGTCCTGACATGCTAGCCACTGACCTCGCCTACTACCTGGTCCGAAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015314:ENSBTAT00000020365:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146981=ASL_C2=PU(20.0=51.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]