RnoINT0021921 @ rn6
Intron Retention
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30177107-30177776:+
Coord C1 exon
chr12:30177107-30177190
Coord A exon
chr12:30177191-30177695
Coord C2 exon
chr12:30177696-30177776
Length
505 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
3' ss Seq
ACTGGACCTAACGCCTCCAGATT
3' ss Score
3.94
Exon sequences
Seq C1 exon
GAAGACAAGGAGGCTGTGTTTGAAGTGTCTGACACCATGACAGCTGTCCTCCAAGTAGCCACTGGAGTCATCTCTACACTGCAG
Seq A exon
GCAAGACTCGTCTTCCTCACCTCACCTACCTCTCCCCCACTACGCCCAGACAGGGATTTGCAGGGGAGGCAGTAAGGCCAGAAAACCTGGGAAGGGGAAGGCAAATGTGTTTCCAAGGAAGAGGGATGGGATGGGTTAGACACCAAAGCCCCAGATTTGGGCTAGAGTAGGTTTTTTTGTTTTGTTTGTTTCCTGGGACGTGGTTCCTCTGTGTCCCCCTGGCTGTCCTAGAACTCACTGTGTAGACCAGGCTGGCCTCAAGCTCAAGAGATCCACCTGCCTCTGCCTCCCTAGTGCTGGGACTAAAAGCATGGGCCTCAACCACCGCCACGTTGCCAAGTCTTAACCCTATCTCAAAAGACAAAAGCAAACTAATAATAAAAACGTTCGAGTAGAGAGTGGGTTGCTTAGGGGGTGGGAGGCATAACTCAGTTGCCAAGGACACAGTAGGGCAGGCTCCAGGGGATCCCCCAAGCTCACCTTCTACTGGACCTAACGCCTCCAG
Seq C2 exon
ATTCATCGTGAGAACATGGCACAGGCACTCAGCCCTGACATGCTGGCTACCGACCTTGCCTACTACCTGGTCCGCAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903:ENSRNOT00000001211:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146981=ASL_C2=PU(20.0=51.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]