BtaINT0003817 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BG57]
Coordinates
chr25:34352411-34354235:-
Coord C1 exon
chr25:34354077-34354235
Coord A exon
chr25:34352492-34354076
Coord C2 exon
chr25:34352411-34352491
Length
1585 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
AGTTTTTTGATTTGTCATAGACG
3' ss Score
5.73
Exon sequences
Seq C1 exon
ACCAGAACAGATGATCAACTCAACACTGTCTTCACCGTCGACCAGTGCCCCAGATCCGTGTGCGAAGGAGACTGTGCTGAATGCCCTCAAAGAGAGAAAGAAGAGGACAGTAGGGGAGGAAGACCAAATGTCTGCTGATGGCCAGGAAAATAAAAGAAG
Seq A exon
GTAACAGGACCAGCAGAGTAATTAACAGGCTTCTCCCATGGGCTTCCAGGTTTTGTTGAAATATAGGGTCACTCTCCAGAAATACACAAACCAGCTCCAGTTTGTGACCCTTAGTAGATTCCCTTCTTTGGTTTTCATAGAAGTGGTTGATAATAAGGTCTTAAATTAGTGCTGTTCATTTTCTGAGACACGTGTTAGATAAATTTTGTAGTTTGCTTTTTCCGTAAGTACTAGAGATAAGCCGGCAACTATTAGCCAGGTTAACCTTGTACTTTTGATACAAACCAGTTAAACTTTATTTTTGAGAGCGCATGCTTGCAGTCTTCCCCTCAGAGTCTCCTGGTGTTTAATTATTTGGGTAACCACCAATTTCACTGTTGTAATTGTGCTGAGGGGAATGCTTGGCAAACAGAAGTGAGGACTAGAGTATGGTAGATATGTCAGTAATGGGACTAAAACCACCTTCATTATTTGCTTTTCTGTATGGATGATGCAGTAAACAGTTTATTAAGGCTTTAACAGGCTTTGCAAGGAGTCAGTTAAGGATTCCAGTCGTTTTTTTAGTTCAGTGAATGGAGCACCCACTATATGTCAGAGCCTATTCCAGGTACAGTGGATAGAGCTTTGAACAAGATAGAGTCCTCATGGGTTTGAGAGAGACCAGAGAAAAAGGATAATAAAAATAAACAAGGTAACCATAGATTATAAACAAGTAGAGATAAACAGAGGGTAGTGAGAAGGGGGCTTCTTTATATACGGTGGTCAAAGAAGTGTTCTCTAAGGAGACAGCAGCCTCACACTAAAAAATCATTGGCCCCATTACCTAGAGAAGATTGTTCATATCCTACAGGGTAAAAATTGGTCAGCTTTGATACTTCAGATAACAAAATTGAGTAGGGAAATATTAATGCAAGTGTATTTATGTCATAGAAAGATCAGGTAATGATGACTAGAAATAAATATGATTGGCATGTGAGCAGTTTGACCTAAAGTCAACTAGCTAAGCAGGAGTGGCAGGGGGTGAGGAGGTGTGGAGGTGGGAGAAGAAATAACTTTATGGTTCATCTAGGTTTCTCATGTTCTCCAGGGGGTAATTTTTCTTGACCCTAGTGAGCCTATACTTGAGGATTCTATATTACCTTTCCCATGATAGGAATAAGTGATAACTATGTGCACCATGCAAAGCCCTTCTATGTGATAGGTCAAGTTTTTCTTTAACAGACTTGTCATATTAACCTGTAGAGCACCACAGGAGTGTGGGTTGACCCCTAAAATGTTGTTTTTGTTTTTAATTTGGGTATGGTAGGATGGTAAATTTGTGATTCTGATATTTCGGTGAGAAATTAGCAAATAATTGAAACAACTTAATAGTTCAAAAGGTCTTGAAATATTTTCATATTTTGCTTACTGCCCTAAATCTTAGGATAAATTTAACTTTTGGAATCTTTGTGGTTGAAGCATCCCTCTTTTTGTCTCGCAGGGAACCTGCGCTCCATAGAAATAGTATAAAAAGAATATGGGAATATGATTTGGGGCCGAGGGAGAAGTAATTCCATTTAATTGAGAGTTTTTTGATTTGTCATAG
Seq C2 exon
ACGCCATGATAGCAGTGGGAGCGGACATTCAGCGTTTGAGCCCCTTGTGGCCAATGGCGTCCCTGCTTCTTTTGTGCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017939:ENSBTAT00000023854:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152291=POM121=PU(10.0=44.4)
A:
NA
C2:
PF152291=POM121=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAACAGATGATCAACTCAACA
R:
AGGCACAAAAGAAGCAGGGAC
Band lengths:
238-1823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]