MmuINT0124050 @ mm9
Intron Retention
Gene
ENSMUSG00000053293 | Pom121
Description
nuclear pore membrane protein 121 [Source:MGI Symbol;Acc:MGI:2137624]
Coordinates
chr5:135864507-135867650:-
Coord C1 exon
chr5:135867492-135867650
Coord A exon
chr5:135864588-135867491
Coord C2 exon
chr5:135864507-135864587
Length
2904 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
ATTTTTTAAATTTATCACAGGCG
3' ss Score
6.78
Exon sequences
Seq C1 exon
GTCAGAGCAGATACTCGATACAACACTGTCTTCACCATCAAGTAATGCCCCAGATCCTTGTGCAAAGGAGACTGTCCTGAACGCCCTCAAGGAGAAGAAGAAAAGAACAGTGGCGGAGGAAGACCAGCTGCACCTTGATGGCCAGGAAAACAAGAGAAG
Seq A exon
GTAACGAGCAGTCTCAGTATGGTGTTACACTGCCTTCCCGGGGGTGGGGTGGGGGCTCCAGAGAATTCAAGTGGTGGTGATTACCAGGCAGGTGTAGAGGCTGCTCCAGTCTGAGCCTTGGAGCAGCGTGGTAACAAGGCTTTAATACTGTTTACCTCTTAAAGCACGGGCTGGGTAAGTTTCAGTCCTCGTGCACGTAAACCTGCATTGGCATTTGGCTCGCCCTCCCCTCCTAGTGTTCTGAAGCAGGTTCTATTCTACAACCCGAGCTAGCCTTGAACTCTGGGCCCTTCTACCTCGAAAAGTGGGATCCTTAGCCTGTGTGACCAGCTCTCTGCCTTGGATGCTACTCTGTGAAATTTTATTCCCAAAAGTAAATGCTCAGAGATTTCCCCTCCAATTGTATGGGTCTGTTTGTTTGGTTTGGTTTTGTTGTTGTTGTTTTAGTTAAATAGCAGTAGTGTTGTTGAATGAAAGGCATAGTAGGACTGTCAGTGATGAGCAGAACCAGTTTTCTTTTTAGTATATGGGAACTTAGTGAGAATAGAGAAAGCAGCTTCCGGGGTGTGCAGAGGGAAGGTTGGAGAGGGTCATCAAGAGATACAGGACCTTTGTTTTTATGGTGGTTGTTTTGTGGTCCTCGGGAAGAGACTTAGGGCCTGCTGCATGCTATGCAAGTGTTCACTGCCAAGCCATACCCCCTGGTTCCTCAGCGGCTGTACTGCTGACCATAGACCCAGCCCTCTACCTTTTTTTTGTAGTTCAACAAATGCTTATCAAGCACCTACTGTGTGCTAGGCCCTTACTCCTCTTAGTTATGGGACTTTTCTTTTTTTTTTTAATTTGTTTTTTTTTTATTTGTTTTTGTTTCTTGTTATGGGACTTTCAAGGTAACAAGGTTTTCTATGTTCACGTACATACTTAAAGATATACATAGGGGTATGTGTGGGGTTTGGGTTGTTATTATTTATATGCTTGGTGCCCATTGAGTTCAGAAAGTTCAGAAGTTCAGAGCTCCTGAAACTGGAGTTATGGGTAAATATGAGCCTCAGTGTAGGTACTGGGAATTGATTGACCCTGGGTCCCCTGCAGAAACATCCAGTGCTCTAAACTACTGAGCTGGGGTTTTTTTCCCAGCTTTTTTTCAACTTCTGAAATTTTAAAATTACATTGTATTCACTTAATTGCCTGGGGGGGGGGGCGGTCAAGAAGGCGTACACAGTTGTCACAGAAGATATGTGGAAGCCAGAAAACAACTTGGAGGAATTGATTCTCCCCTTCTGCCATGTGGGCCAGGAAGTCATCAGGCTCAGGCTTGGTGACAATCACCCTGCTCACACTGAGCCAGCTCTCCAACCCCCACAGTGGGATGGTGTATTTGAGACGGTTTGCTGGGTAGCCCTGGCCTCCCACTTGCTACCTAGGCAGGCCGTCTCCTCTCCATGTGCCAGCACACCCTGCAAGGCTACTTAGTTAAATGGTTAGTTAACAAGGTAACAACAGATCATAAGTTTATGAGAGCAGGAAGTAGAGTGTTAGAAATGAGGAGGTCTCTTGGTGTAATGAGGAAGTGCTCTCTTAGGATGCGGTGCACCACGCACCTGGGAAGAATAGCTGTCATCCCCTTTGTCTGGACCACTTACAGCTGGCAGGTTTTCAGCTGACCATTTCCAGTCCTGGAAGACAAAAGGACGTGAAGGAGATTCTGCTCTTGACTTCCTTTTGAGACAATGTTTATAGCCCAGGCCACTGTGTAGCCCAGGCTAGACTGGCATTCTTAATTGTTCTGCCATAGCCTCCCAAGTGCTGCTGGGATTATATATGTGCATTGCTGTGCCTCACACTAGTTAAGGAAATCTTAAGAAATGGCCCCTGCATTTATGGACTAAAGGCTATCAGAGGAGTTGCAGGAATGGCGAGTAAGCAGTTGTGCTGATGTCCCATAGCTAAACAGGACTGAGCCGATGGCCAGGGAGGAAATGATAACTGGTTGGTCCAGGAAAGTGTCTTGGCCTTGGTGCATCTGTAGCTGAGGAGTTGGTATTTTCCCTGTGGTTGGAATGTAGCAGTGATCACAGGCACCATGTGTGTACCTGGCCCCTGTAATCCCAGCACGTGGAGACTGAGCCAGAAGCATTGGAAGTTTAAAGGCAGCCTGAGGCTATGGAATATGTTCTGGTATAGTTTGGACAGAATAACAAGAACTTGATTAAAAATGTTTTTCCTAGCCGGGCGTGGTGGCGCACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATCTTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAACAAAACTGTTTTTCCTTCGTGTGGTACACCTGAGCAGTTGGGGCATTTGGAGATTCTTCCTGTCCCTTACTTACCAGGTCAGTCTTAGAGTGATGCACTTCACAGAACTGAGTGGTTTGAAACAACCTTCTTTTTTTTTTTCCTTTTTGGTTTTTTAAGACAGGGTTTCTTTGTATAGTCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCCAGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCTTGAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCTGGCGAAACAACCTTTTCTTATTTAGCATGAAATGTATACTAGGCCCCAGGAGTATGAAGAAATGCTTTCAGTTTTCTTACCTGTTTGTTGTGAGTTGGTTCGCTCATGGCCATGGTGGTCAGAGCACAGCTTGTGAGGGAGGGTCAGTTCTCTCATTCCACTGTGTAAGGTCCAGAGAATAAAGGGGGCTGGGAGTACGGGCACGCTGTTTCATGAAGGATTTTTTAAATTTATCACAG
Seq C2 exon
GCGCCATGATAGCGGTGGGAGCGGACATTCAGCATTCGAGCCCCTTGTGGCCAACGGAGTCCCTGCTGCATTTGTGCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053293-Pom121:NM_148932:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152291=POM121=PU(10.1=44.4)
A:
NA
C2:
PF152291=POM121=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: