GgaINT1002797 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NE56]
Coordinates
chr19:307752-309503:-
Coord C1 exon
chr19:309292-309503
Coord A exon
chr19:307833-309291
Coord C2 exon
chr19:307752-307832
Length
1459 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTCTGCCCTCTCTCCTGCAGGCG
3' ss Score
12.77
Exon sequences
Seq C1 exon
CTACGGCCGTCCCTTCGCTCACCCCGTGTCGCGTTCCCTCCCCGCAGGCTGGAGCAGCTCCTGTCGCCCGTCGCCCTCCTGCCCGGCAGCAGCCCGGACCCGTGTGCAAAGGAGACGGTGCTGAACGCCATCAAGGAGAGCAGAAAGAGGGCGGTGGAGGAGGAGGAGGAGGAGGAGCAGGCGCTGGGTAACGATCAGGACAGCAAGCGAAG
Seq A exon
GTAATGAGCCGGCTGTGCTGCCCGTGTGTTGGGAAGGTCGAAACCGGCCCAGCGCTTCGGTGGCAATGGATGCTGCGTGCACCAGAACTGTGCCTGGGGCAGAAGAGCACCGCGTACCCCTTTGCATGGCCTTCTCAGCCGGGTCAGAGATCCTTCTGGCACTCCTCCTTCTTGAGATCAAAAGGATGCCTCTGTCTGGGCATGTCTGTGGGTCAGGTGTGTTCCCCACGGCACTGGGGATGGAGAGGCGTGGAGGTGCCCCAGGGACGCCTGGCAAGGAACCTCCGCTGGAGGGAGGTGACTGCTGTCCCCGTGGGGTTTGCAGGCTCTTGGGGAGCTGCTTGTGCCAGGGCAGGCTGGAGTTCTGCCTGTCAGGGGTTGCTGCTCTCCCCGGGTGTTAGGGCTCCGGGTAGAAGCATGGTGCTTTAAAAGCTCATTATGCTTCCTGTGCTGTAACCAGCAAAAGCAAGAAAAGGCAGAAGGGATAACAGGAGAGACTTTTTTTTCCCGTTAGTCAAGCTCAGTGATTTTCAGCTCCGAGCTTCAAGAGAGGAGACTGCCATGCCTTCGCCAGCACCCTGGGAAGGCTGTGCGTATGTCCTGGATACTGAGCTCTGCTGCAGCCTGTGTGACTGTCCCTGCAGTGCACTACCTTGGTTCCGCACTCCCTGCACTCTCGCCTTTGCTTGGTGTATCTGAGCCCCACAGGAGCTGAGCTGGATGATGCAGGCATGGGTGCATGAGCCCATGTCTGGCTCATATCTAGGCCAATATCTGTATGTGCCACAAAAGCCAATCGTTTTGAAGGCATTAACAACTGGCCAGCATGAAGAATGCTTGTAGGTAGAAAACCTGTAACGTCAGAGCAGAAGGGAGCCTGCATCAGCTGGAGAGCAGCTGTGCAGTAGGATCAGATCACTCAGGGCTAGAGGGGACCTGGGATAAGTAACAGGGCTGGCCTGATGCCCCCGGCACAGCGTAACAGCAGGGCTTGTTGTAAGGCTTCCAGGTTTCACTGTGGGAGAGGAGGACTTCATTTCTGACTCAAACTGTTCAGGGTGCTGGCTGGGAAGGGATAGGAGACTTGAGCTGCAAAGCTCTGATCCATTCTGAAAATGAGCTGATCAGCCTTTCTGAAATGTTTCAAATGAGTAACAGATTTGAGCAAAGATTTCGTTAAATCTAAACTACTCAGCCCAGCAGGCAGCTGATGGAGCTGCTGGAACTTGGGGGGAAGCAGCTGGGGTTGAGAATCAGTGACGCAGGGCTGGGTGAAGGGGAAAAATCTGCCGGACTTGGATGATGGAAACCTCCATCCCAGGTGTTAGGTGGCAGAAGAGCAGGGTTTGTGCTCTCCCGGTGCCAAGCCTGCCTGGAAGGGATCCTGTGGCCTGGCTGGGAATACGTCCTCCTCCCTCTTGCCTCTTCCCTGTCACAGCTTCTGCCCTCTCTCCTGCAG
Seq C2 exon
GCGCCATGACAGCAGCGGAAGTGGGCAGTCGGCATTTGAGCCCCTGGTCGCCAACGGTGCCCCCGCCTCTCTTATACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021694:ENSGALT00000001368:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152291=POM121=PU(11.2=38.0)
A:
NA
C2:
PF152291=POM121=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCCTTCGCTCACCCC
R:
TTGGGTATAAGAGAGGCGGGG
Band lengths:
286-1745
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]