BtaINT0003818 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BG57]
Coordinates
chr25:34350694-34352491:-
Coord C1 exon
chr25:34352411-34352491
Coord A exon
chr25:34350869-34352410
Coord C2 exon
chr25:34350694-34350868
Length
1542 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TCTTCTCCCCTTCTTCTTAGGCC
3' ss Score
10.53
Exon sequences
Seq C1 exon
ACGCCATGATAGCAGTGGGAGCGGACATTCAGCGTTTGAGCCCCTTGTGGCCAATGGCGTCCCTGCTTCTTTTGTGCCTAA
Seq A exon
GTAAGTGAAAATCCGTGGATGAGATGTACACTGTTTGGAAAAGGGGCTTTATCAGAATTAATTGTCCCGTTGACTTTCTTCTTTGCTTTTGTATTGCTTTATTAATTCAGGTTCACATCTTTGAAATCAGAGAGGAACGTTTTGAGTAGCTTGCCACAATTATCTTCTAATTCCTTTTAATGTTTTTTCACTAGTATGGACAAAATATGCTAAAGCTAAGAGGGTTTATAAATATATTTAATAACCAAGTGTATGAACAGATGCTGACAAGGTTGGTGCAATGGATAAAATGCGATGATATGAAATTGAAGATAAAATATTACATCTCTACATTTGAGTTTAAATACATTTGAGAAAGAATTGATCCGCTTAATCTGAGCTAGTAGTACAGTATGGCTGCCCAAAAAAGCTAATGTGCTCCTATCTATGCTGATAGAACAGAAACTGACATGAGGCTGGTTAGTGATAGTCCTGCTTCTCTAACTTCTGCTTGGATTGTCAGTGGAGTGTATTTGGTTTGGTGTACTACACTGTAAGAGAGGATGTACACCAAAATCTTATGGGGTGGTGGACGAAGGTGTATAAATACTAGCCCAGAGATGAACAGTCTCAAGGAGAATAAGGAAATTTGGATATTGGTGGCTCAGAGGGTTAAAGCATCTACCTACAATGCGGGAGACTGGGTTCAATCCCTGGGTTGGGAAGATCTCCTGGAGAAGGAAATGGCACCCCACTCCAGTACTTTTGTCTGGAAAATCCCATGGACAGAGGAACCTGGTAGGCTGTAGTCCATGGGGTCGCAAAGAGTCAGACACGACTGAGCAACTTCACTTTCTTCACTCCAAAAAATGGAAGGACTGTCAGGTCAAAAAAGAAAAACAACTTGCTCAGCACAACTCCAAGTAGTATCCATTGGCGAGTGTATCCAAGTTAGAGGGAAAAGCATTTTCATCCAGTATAAGAATAAACTGGTCTGTGGTTTGGTATCATAACAGAGATTGAATGGCTCTTCCATAGGAAAGAGGTATAGGGAATTTCTGTTTAGTTGAAAGTTTAGAAAAGATAGTTCATTCCTCTTAACTCTGATGTTTTTTTTAAAAGTTTTATCCAGTTATAATTGGCGAATAATCTGCCTGTTTAAAGTATACAGTTTGATAAGTTGTGACATGCATACAGCTGTGAAACCGTCACGACAGTCAAGATAATGAACATACTGTCACTTCCAAAAATTTTCCTGTGTCCCTTAGTAATACCTCCTTTCAGCTTGCCCCGATCTCCAGGTGTCCGCTGATTTGTTTTCTGTCATATAGATTAGTGTGCATCTTCTAGAATGTTAGGCAGTGGACTCACACTTTTGATTTTTAAAATACTTGACTTTCTTTTCCTGACTGTCAGATGTATTTAGCCAAATTGTTAATAATAAAATTAAGAGCATTTTTTTTAACTGATTTTTTTTTTAAAGAAAGATTCTATGTCCATGGACAAAACCTTAAAAAAATGTCTTTAATAATGCATCCAACTGTCTTCTCCCCTTCTTCTTAG
Seq C2 exon
GCCTGGGTCTCTGAAGAGAGGTCTTAATTCACAGAACTCAGATGATCACCTGAATAAGAGATCCCGCACCTCTTCTGTGAGCTCCTTGACAAGCAGCACGTGCACAGGCGGCATCCCCAGCTCCAGCCGCAACGCCATCGCCAGTTCCTACAGCTCCACGCGTGGTCTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017939:ENSBTAT00000023854:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152291=POM121=FE(11.3=100)
A:
NA
C2:
PF152291=POM121=FE(24.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGATAGCAGTGGGAGC
R:
CTGAGAGAGACCACGCGTG
Band lengths:
254-1796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]